View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11374_low_6 (Length: 680)

Name: NF11374_low_6
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11374_low_6
NF11374_low_6
[»] chr2 (8 HSPs)
chr2 (261-536)||(7652075-7652350)
chr2 (11-195)||(7651834-7652006)
chr2 (57-195)||(7657269-7657407)
chr2 (571-660)||(7652370-7652459)
chr2 (571-660)||(7657792-7657881)
chr2 (269-339)||(7657490-7657560)
chr2 (448-504)||(7657639-7657695)
chr2 (498-536)||(7657725-7657763)
[»] chr4 (4 HSPs)
chr4 (429-467)||(48572896-48572934)
chr4 (49-89)||(48539049-48539089)
chr4 (49-89)||(48573304-48573344)
chr4 (433-487)||(48538558-48538612)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 261 - 536
Target Start/End: Original strand, 7652075 - 7652350
Alignment:
Q  261 aatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga 360  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652075 aatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga 7652174  T
Q  361 ggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg 460  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652175 ggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg 7652274  T
Q  461 gtggtggcgacggtggaaataatcagagtcagaatcaaggtggaatgccagagggtaaaaatggaaataagaatgt 536  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  7652275 gtggtggcgaaggtggaaataatcagattcagaatcaaggtggaatgccagaaggtaaaaatggaaataagaatgt 7652350  T

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Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 7651834 - 7652006
Alignment:
Q  11 caaagggaggtggacaacaagagcagaatcctcaacaacagcttcaacaacagttgcaacaacttcagcagatgaaaggacttgaagatcttaaggggcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||| |    
T  7651834 caaagggaggtggacaacaagagcagaatcctcaacaacagcttcaac------------aacttcagcagatgaaaggacttgaagatcttaaggggac 7651921  T
Q  111 tcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagag 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7651922 tcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaatccaaatatgaaaggtgttaaggtcaatttgcctaaagag 7652006  T

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Target: chr2; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 7657269 - 7657407
Alignment:
Q  57 acaacagttgcaacaacttcagcagatgaaaggacttgaagatcttaaggggcctcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaat 156  Q
    ||||||| ||||||||||||| || || |||||| ||| |||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  7657269 acaacagctgcaacaacttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaat 7657368  T
Q  157 ccaaatatgaaaggtgttaagttcaatttgcctaaagag 195  Q
     |||||||||||||||||||||||||||||||| |||||    
T  7657369 acaaatatgaaaggtgttaagttcaatttgcctgaagag 7657407  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 571 - 660
Target Start/End: Original strand, 7652370 - 7652459
Alignment:
Q  571 attccaaataacaatgtgggtaaaaaggtaattggaatgggagaaagtggtgttcaaggtgtgatgaataatggcctcccaaacatgggt 660  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||    
T  7652370 attccaaataacaatgtgggtaaaaaggtaaatggaatgggagaaagtggtgttcaaggtatgataaataatggacttccaaacatgggt 7652459  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 571 - 660
Target Start/End: Original strand, 7657792 - 7657881
Alignment:
Q  571 attccaaataacaatgtgggtaaaaaggtaattggaatgggagaaagtggtgttcaaggtgtgatgaataatggcctcccaaacatgggt 660  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||    
T  7657792 attccaaataacaatgtgggtaaaaaggtaaatggaatgggagaaagtggtgttcaaggtatgataaataatggacttccaaacatgggt 7657881  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 7657490 - 7657560
Alignment:
Q  269 atcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaag 339  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  7657490 atcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctcaaaag 7657560  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 504
Target Start/End: Original strand, 7657639 - 7657695
Alignment:
Q  448 ggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtgga 504  Q
    |||||||||||||||||||| |  || ||||||||||||||||||||||||||||||    
T  7657639 ggaaagaaaggtggtggtggtggtggcggaaataatcagagtcagaatcaaggtgga 7657695  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 7657725 - 7657763
Alignment:
Q  498 aggtggaatgccagagggtaaaaatggaaataagaatgt 536  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7657725 aggtggaatgccagagggtaaaaatggaaataagaatgt 7657763  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
Q  429 tggtggaaatgggaatggaggaaagaaaggtggtggtgg 467  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  48572934 tggtggaaatggcaatggaggaaagaaaggtggtggtgg 48572896  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 48539089 - 48539049
Alignment:
Q  49 cagcttcaacaacagttgcaacaacttcagcagatgaaagg 89  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  48539089 cagcttcaacaacagttacaacaacttcaacagatgaaagg 48539049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 48573344 - 48573304
Alignment:
Q  49 cagcttcaacaacagttgcaacaacttcagcagatgaaagg 89  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  48573344 cagcttcaacaacagttacaacaacttcaacagatgaaagg 48573304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 487
Target Start/End: Complemental strand, 48538612 - 48538558
Alignment:
Q  433 ggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcaga 487  Q
    |||||||| |||||||||||||||||||| ||||| |  || |||||||||||||    
T  48538612 ggaaatggcaatggaggaaagaaaggtggcggtggtggtggaggaaataatcaga 48538558  T

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