View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_10 (Length: 527)
Name: NF11375_high_10
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 105 - 513
Target Start/End: Original strand, 35162784 - 35163193
Alignment:
| Q |
105 |
atgatctttttcatctgttccattgcaatttgggtttatatttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttcc |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35162784 |
atgatctttttcatctgttccgttgcaatttgggtttatatttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttcc |
35162883 |
T |
|
| Q |
205 |
c-tgtaatgtgtttgtatatattaaaaacggaaaagttaacatcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagaca |
303 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35162884 |
cctgtaatgtgtttgtatatattaaaaacggaaaagttaacatcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagaca |
35162983 |
T |
|
| Q |
304 |
atccttgtctatatataaagaaataaatttaataagtacatattagtggtttcgatcaaagtaattattttacggccacataatttatgcatttaaccat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35162984 |
atccttgtctatatataaagaaataaatttaataagtacatattagtcgtttcgatcaaagtaattattttacggccacataatttatgcatttaaccat |
35163083 |
T |
|
| Q |
404 |
tccaccccaacctgtgctccaccttccccaccggccactgaacattttgacggcaatattagagttgccggaatcttatatcgtcgatttatactccccg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163084 |
tccaccccaacctgtgctccaccttccccaccggccactgaacattttgacggcaatattagagttgccggaatcttatatcgtcgatttatactccccg |
35163183 |
T |
|
| Q |
504 |
cctttctctg |
513 |
Q |
| |
|
|||||||||| |
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|
| T |
35163184 |
cctttctctg |
35163193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 105 - 513
Target Start/End: Complemental strand, 44797336 - 44796927
Alignment:
| Q |
105 |
atgatctttttcatctgttccattgcaatttgggtttatatttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttcc |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
44797336 |
atgatctttttcatctgttcctatgcaatttgggtttatatttaaaaacattatcagcacattcttcttgttctttttgtaaacttgttttcaaatttcc |
44797237 |
T |
|
| Q |
205 |
c-tgtaatgtgtttgtatatattaaaaacggaaaagttaacatcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagaca |
303 |
Q |
| |
|
| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44797236 |
cctgtaatgtgttcgtatatattaaaaacagaaaagttaacatcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagaca |
44797137 |
T |
|
| Q |
304 |
atccttgtctatatataaagaaataaatttaataagtacatattagtggtttcgatcaaagtaattattttacggccacataatttatgcatttaaccat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44797136 |
atccttgtctatatataaagaaataaatttaataagtacatattagtggtttcgatcaaagtaattattttacggccacataatttatgcatttaaccat |
44797037 |
T |
|
| Q |
404 |
tccaccccaacctgtgctccaccttccccaccggccactgaacattttgacggcaatattagagttgccggaatcttatatcgtcgatttatactccccg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44797036 |
tccaccccaacctgtgctccaccttccccaccggccactgaacattttggcggcaatattagagttgccggaatcttatatcgtcgatttatactccccg |
44796937 |
T |
|
| Q |
504 |
cctttctctg |
513 |
Q |
| |
|
|||||||||| |
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|
| T |
44796936 |
cctttctctg |
44796927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 105 - 513
Target Start/End: Original strand, 39846005 - 39846414
Alignment:
| Q |
105 |
atgatctttttcatctgttccattgcaatttgggtttatatttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttcc |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
39846005 |
atgatctttttcatctgttcctatgcaatttgggtttatatttaataacattatcagcacattcttcttattctttttgtaaattcgttctcaaatttcc |
39846104 |
T |
|
| Q |
205 |
c-tgtaatgtgtttgtatatattaaaaacggaaaagttaacatcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagaca |
303 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39846105 |
cctataatgtgtttgcatatattaaaaacggaaaagttaacatcccccctatcatggggcttttagccatattcccttttttctcttgaaaaactagaca |
39846204 |
T |
|
| Q |
304 |
atccttgtctatatataaagaaataaatttaataagtacatattagtggtttcgatcaaagtaattattttacggccacataatttatgcatttaaccat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39846205 |
atccttgtctatatataaagaaataaatttaataagtacatattagtcgtttcgatcaaagtatttattttacggccacataatttatgcatttaaccat |
39846304 |
T |
|
| Q |
404 |
tccaccccaacctgtgctccaccttccccaccggccactgaacattttgacggcaatattagagttgccggaatcttatatcgtcgatttatactccccg |
503 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39846305 |
tccacctaaacctgtgctccacctaccccaccggccactgaacattttggcggcaatattagagttgccggaatcttatatcgtcgatttatactccccg |
39846404 |
T |
|
| Q |
504 |
cctttctctg |
513 |
Q |
| |
|
|||||||||| |
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|
| T |
39846405 |
cctttctctg |
39846414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 145 - 513
Target Start/End: Original strand, 39840995 - 39841362
Alignment:
| Q |
145 |
tttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttccc-tgtaatgtgtttgtatatattaaaaacggaaaagttaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39840995 |
tttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgtaatgtgtttgcatatattaaaaacggaaaagttaa |
39841094 |
T |
|
| Q |
244 |
catcccccctaccatggggcttttagccatattcccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttaataagtaca |
343 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
39841095 |
catccccc-tatcatggggcttttagccatatacccttttttctcttgaaaaactagacaatccttgtctatatataaagaaataaatttagtaagtaca |
39841193 |
T |
|
| Q |
344 |
tattagtggtttcgatcaaagtaattattttacggccacataatttatgcatttaaccattccaccccaacctgtgctccaccttccccaccggccactg |
443 |
Q |
| |
|
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39841194 |
tat-agtcgtttcgatcaaagtatttattttacggccacataatttatgcatttaaccattccaccccaacctgtgctccaccttccccaccggccactg |
39841292 |
T |
|
| Q |
444 |
aacattttgacggcaatattagagttgccggaatcttatatcgtcgatttatactccccgcctttctctg |
513 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39841293 |
aacattttggcggcaatattagagttgccggaatcttatatcgtggatttatactccccgcctttctctg |
39841362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35162675 - 35162714
Alignment:
| Q |
1 |
cctgtgtcatgcccctcccactaatttgcttacattgtaa |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35162675 |
cctgtgtcatgcccctcccactaatttgcttacattgtaa |
35162714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44797435 - 44797396
Alignment:
| Q |
1 |
cctgtgtcatgcccctcccactaatttgcttacattgtaa |
40 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44797435 |
cctgtgtcttgcccctcccactaatttgcttacattgtaa |
44797396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39840932 - 39840974
Alignment:
| Q |
1 |
cctgtgtcatgcccc---tcccactaatttgcttacattgtaa |
40 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39840932 |
cctgtgtcatgccccgggtcccactaatttgcttacattgtaa |
39840974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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