View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_20 (Length: 413)
Name: NF11375_high_20
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 35835123 - 35835420
Alignment:
| Q |
15 |
caaaatattcaacactgtattcacctcaatcaaaatggaagctttcttcaaacgtcaagaaccgttacatgaataagtcgtcatgaaaaaataacagcac |
114 |
Q |
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| T |
35835123 |
caaaatattcaacactgtattcacctcaatcaaaatggaagctttcttcaaacgtcaagaaccattacgtgtattagtcgtcatgaaaaaataacagcac |
35835222 |
T |
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| Q |
115 |
tgtctcactggaaaacttaaaaggaggaaaccaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttgga |
214 |
Q |
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| T |
35835223 |
tgtctcactggaaaacttaaaaggaggaaaccaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttgga |
35835322 |
T |
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| Q |
215 |
atcatttggattccaatttagtagagcaccatacggatcagaaattattcttacccgaaattcccacaaagcaattcctgcaaagttccattccaatt |
312 |
Q |
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| T |
35835323 |
atcatttggattccaatttagtagagcaccatacggatcagaaattattcttacccgaaattcccacaaagcaattcctgcaaagttccattccaatt |
35835420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 35835484 - 35835521
Alignment:
| Q |
376 |
cattgtaagttgtaacaggctaattcataaaaatcacc |
413 |
Q |
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| T |
35835484 |
cattgtaagttgtaaaaggctaattcataaaaatcacc |
35835521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 4971157 - 4971068
Alignment:
| Q |
144 |
accaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaattt |
233 |
Q |
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| T |
4971157 |
accacaggaacttacagcatctgcactttaccatcgacgcagtggacaccaaaccagttgcaagggtcacaatcatttggattccaattt |
4971068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 4989066 - 4988977
Alignment:
| Q |
144 |
accaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaattt |
233 |
Q |
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| T |
4989066 |
accacaggaacttacagcatctgcactttaccatcgacgcagtggacaccaaaccagttgcaagggtcacaatcatttggattccaattt |
4988977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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