View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_34 (Length: 340)
Name: NF11375_high_34
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 46631257 - 46630948
Alignment:
| Q |
20 |
tttgatttattcaataaaatnnnnnnntaaccagagataaggaaattttggaaatcaaaacaaaccaannnnnnnngtacagtatgtctattcatttggc |
119 |
Q |
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| T |
46631257 |
tttgatttattcaataaaataaaaaaataaccagagataaggaaattttggaaatcaaaacaaaccaattttttttgtacagtatgtctattcatttggc |
46631158 |
T |
|
| Q |
120 |
agctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagatag |
219 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631157 |
agctttagaacacaatttgcaagtaaggcaagaggagcatcga---tacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagatag |
46631061 |
T |
|
| Q |
220 |
caggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46631060 |
caggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctacctttaccacctccattcaaatgctt |
46630961 |
T |
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| Q |
320 |
ttcttcctatgct |
332 |
Q |
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||||||||||||| |
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| T |
46630960 |
ttcttcctatgct |
46630948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 325
Target Start/End: Original strand, 46172622 - 46172828
Alignment:
| Q |
118 |
gcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagat |
217 |
Q |
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| T |
46172622 |
gcagccttagaacacaatttgcaagtcaggcaggagaagcatcggc---acattcaaagccaatttgtttccaaaag-ctggaattccatgatgacagat |
46172717 |
T |
|
| Q |
218 |
agc-aggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagct---accattaccacctccattcaa |
313 |
Q |
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|| || |||||||||| | || || ||||| ||||| |||||||||||||||||| ||||||||||| ||||| || | ||||| ||||| |||| |
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| T |
46172718 |
aggtagaaagcttaaaaa-taaccactattgatctctattctttaacttaaccaagtggcttgcaaatatttagctgacactactaccatctccaatcaa |
46172816 |
T |
|
| Q |
314 |
atgcttttcttc |
325 |
Q |
| |
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|||||||||||| |
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| T |
46172817 |
atgcttttcttc |
46172828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 46620503 - 46620454
Alignment:
| Q |
244 |
attgacctctactctttaacttaaccaagtaacttgcaaatatgtagcta |
293 |
Q |
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| T |
46620503 |
attgacctctactctttaacttaaccaattggcttgcaaatatctagcta |
46620454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 47 - 325
Target Start/End: Original strand, 15767700 - 15767976
Alignment:
| Q |
47 |
taaccagagataaggaaattttggaaatcaaaacaaaccaannnnnnnngtacagtatgtctattcatttggcagctttagaacacaatttgcaaggaag |
146 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||| ||| |
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| T |
15767700 |
taaccagagaaaaggaaattttggaaatcaaaataaaccaaatttttttgtacagtatgtctagtcatttggcagccttagaactcaatttgcaagtaag |
15767799 |
T |
|
| Q |
147 |
gcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagatag-caggtagcttaaaaaattacaacaat |
245 |
Q |
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||||||| ||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| || || |
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| T |
15767800 |
gcaagagaagcattaa---tacattcaaaaccaatttgattacaaaagtcagaaactccatgatgacagataggcaggtaacttaaaaaattaccactat |
15767896 |
T |
|
| Q |
246 |
tgacctctactctttaacttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgcttttcttc |
325 |
Q |
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||||||||||||||||||||||||||||| |||| ||| || |||||| || ||| | ||||| ||||||| |||||||| |
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| T |
15767897 |
tgacctctactctttaacttaaccaagtagcttgaaaacatttagctaacactacgatctccaatcaaatgtttttcttc |
15767976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 166 - 325
Target Start/End: Original strand, 18373693 - 18373856
Alignment:
| Q |
166 |
tacattcaaaaccaatttgtttacaacagtcagaaactccatgatga---cagatag-caggtagcttaaaaaattacaacaattgacctctactcttta |
261 |
Q |
| |
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||||||| |||||| ||||||| ||| |||| |||||||||||||| ||||||| || ||| ||||||| | | ||| |||||||||||||||||| |
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| T |
18373693 |
tacattctaaaccattttgtttccaaaggtcaaaaactccatgatgatgacagataggcatgtatcttaaaagaaaataactattgacctctactcttta |
18373792 |
T |
|
| Q |
262 |
acttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgcttttcttc |
325 |
Q |
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|||||||||| | ||||||||||| |||||| || ||||| ||||||| ||||| |||||||| |
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| T |
18373793 |
acttaaccaattggcttgcaaatatctagctaacactaccatctccattgaaatgtttttcttc |
18373856 |
T |
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