View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_35 (Length: 333)
Name: NF11375_high_35
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_35 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 50805115 - 50804809
Alignment:
| Q |
18 |
gtaacctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgtt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805115 |
gtaacctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgtt |
50805016 |
T |
|
| Q |
118 |
ctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805015 |
ctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaat |
50804916 |
T |
|
| Q |
218 |
gaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtc |
317 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50804915 |
gaaattgagatttgtgttgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtc |
50804816 |
T |
|
| Q |
318 |
tctgctc |
324 |
Q |
| |
|
||||||| |
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|
| T |
50804815 |
tctgctc |
50804809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 50870762 - 50871068
Alignment:
| Q |
18 |
gtaacctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870762 |
gtaacctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgtt |
50870861 |
T |
|
| Q |
118 |
ctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870862 |
ctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaat |
50870961 |
T |
|
| Q |
218 |
gaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtc |
317 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50870962 |
gaaattgagatttgtgttgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtc |
50871061 |
T |
|
| Q |
318 |
tctgctc |
324 |
Q |
| |
|
||||||| |
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|
| T |
50871062 |
tctgctc |
50871068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 19057077 - 19057379
Alignment:
| Q |
22 |
cctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctca |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057077 |
cctttacgggttcatatatcttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctca |
19057176 |
T |
|
| Q |
122 |
ttttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057177 |
ttttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaa |
19057276 |
T |
|
| Q |
222 |
ttgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
19057277 |
ttgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtattctctg |
19057376 |
T |
|
| Q |
322 |
ctc |
324 |
Q |
| |
|
||| |
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|
| T |
19057377 |
ctc |
19057379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 42348931 - 42349049
Alignment:
| Q |
146 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgtcg |
236 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
42348931 |
caagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
42349030 |
T |
|
| Q |
237 |
aaagtggtatgtactcttc |
255 |
Q |
| |
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||||||||||| ||||||| |
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| T |
42349031 |
aaagtggtatgcactcttc |
42349049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 11267 - 11181
Alignment:
| Q |
18 |
gtaacctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgtttttt |
105 |
Q |
| |
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|||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11267 |
gtaacctttacgggttcatatatcttaa-caattttatatttaaatactcctttagcaaataacttcttcatctgttgtttttttttt |
11181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 40705692 - 40705780
Alignment:
| Q |
18 |
gtaacctttacgggttcatataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
110 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
40705692 |
gtaacttttacgggttcatatatcttaa-cagttttatatttaaatactcctttagcaaataacttattcat---ttgtttgttttttgtcta |
40705780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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