View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_36 (Length: 331)
Name: NF11375_high_36
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 2206459 - 2206142
Alignment:
| Q |
1 |
tcgagaggtttgagacatctcacaaacaatacgacatgttatagatgtagagctattgttgaggatgatatgcttactctttgagattgctctattacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206459 |
tcgagaggtttgagacatctcacaaacaatacgacatgttatagatgtagagctattgttgaggatgatatgcttactctttgagattgctctattacaa |
2206360 |
T |
|
| Q |
101 |
tgtctgtttataggtatttttattccacttagttgaatgatttcttctcaaatgattgcaaagtttagtttaagcaacatgctatgaataaggcacgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206359 |
tgtctgtttataggtatttttattccacttagttgaatgatttcttctcaaatgattgcaaagtttagtttaagcaacatgctatgaataaggcacgact |
2206260 |
T |
|
| Q |
201 |
acttctcatagtaatttggtatgagattttgaggaacatgaatgaagaaattctttaaaatatgaagaaagatacttgaaatttggttaatagttatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
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| T |
2206259 |
acttctcatagtaatttggtatgagattttgaggaacatgaatgaagaaattctttaaaacatgaagaaagaaacttgaaatttggttaatggttatctt |
2206160 |
T |
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| Q |
301 |
tttcatggttcacgctct |
318 |
Q |
| |
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|| ||||||||||||||| |
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| T |
2206159 |
ttccatggttcacgctct |
2206142 |
T |
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