View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_high_37 (Length: 323)

Name: NF11375_high_37
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_high_37
NF11375_high_37
[»] chr3 (2 HSPs)
chr3 (18-313)||(36082593-36082888)
chr3 (132-313)||(22931669-22931850)
[»] chr1 (1 HSPs)
chr1 (133-313)||(51866430-51866602)
[»] chr2 (1 HSPs)
chr2 (134-189)||(7468128-7468183)
[»] chr8 (3 HSPs)
chr8 (147-188)||(44912715-44912756)
chr8 (147-228)||(44913657-44913739)
chr8 (147-191)||(25479825-25479869)
[»] chr4 (2 HSPs)
chr4 (147-188)||(24412976-24413017)
chr4 (147-190)||(26905357-26905400)
[»] scaffold0019 (1 HSPs)
scaffold0019 (149-190)||(59573-59614)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 36082593 - 36082888
Alignment:
Q  18 actattagatcgtattccaacgaggtcgaatcttgctattcgtaatgttttggagcggaatgcaaacttgaatttgttagttttaattcaagnnnnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||            
T  36082593 actattagatcgtattccaacgaggtcgaatcttgctatttgtaatgttttggagcggaatgcaaacttgaatttgttagttttaattcaagtttttatt 36082692  T
Q  118 nnnnnnnnnnatattaaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacga 217  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36082693 tttattttttatattaaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacaa 36082792  T
Q  218 acgtgaataagtcttatataaagggaatgttgtaactactttcataatccaatgaatacacatagcttacaacaataatctcttccttcttctctc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36082793 acgtgaataagtcttatataaagggaatgttgtaactactttcataatccaatgaatacacatagcttacaacaataatcccttccttcttctctc 36082888  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 313
Target Start/End: Complemental strand, 22931850 - 22931669
Alignment:
Q  132 taaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgtt-agtatgattagatttcttactaagcaacgaacgtgaataagtc 230  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||| ||| || ||||||| ||||||||||||  ||  ||||||||||    
T  22931850 taaaacatgtttagtagtttgttacaagtgagtcaggtgatgtagctaagtttgttaagtttgtttagattgcttactaagcaagcaaattgaataagtc 22931751  T
Q  231 ttatataaagggaatgttgtaactactttcataatccaatg-aatacacatagcttacaacaa-taatctcttccttcttctctc 313  Q
     |||||||  ||| ||||||||||| ||||| |||  |||| ||||||||||| ||||||||| |||||||||| ||||||||||    
T  22931750 ctatataa--ggagtgttgtaactattttcacaat-taatgaaatacacatagtttacaacaattaatctcttctttcttctctc 22931669  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 313
Target Start/End: Complemental strand, 51866602 - 51866430
Alignment:
Q  133 aaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacgaacgtgaataagtctt 232  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||        ||||||| |||||||| |||  || ||||||||||| |    
T  51866602 aaaacatgtttagtagtttgttacaagttagttagatgatctagctaagtttgt--------ttagattacttactaaacaagcaaagtgaataagtcct 51866511  T
Q  233 atataaagggaatgttgtaactactttcataatccaatg-aatacacatagcttacaacaa-taatctcttccttcttctctc 313  Q
    ||||||  || |||||||||||| ||||| |||| |||| || | |||||| ||||||||| || ||||||| ||||||||||    
T  51866510 atataa--ggcatgttgtaactattttcacaatctaatgaaaaagacatagtttacaacaattattctcttcattcttctctc 51866430  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 7468183 - 7468128
Alignment:
Q  134 aaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttag 189  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  7468183 aaacatgtttagtagtttgttacaagttagttagatgacctagctaagtttgttag 7468128  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 44912756 - 44912715
Alignment:
Q  147 agtttgttacaagttagttaggtgatctagctaagtttgtta 188  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  44912756 agtttgttacaagttagttaggtaatctagctaagtttgtta 44912715  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 44913739 - 44913657
Alignment:
Q  147 agtttgttacaagttagttaggtgatctagctaagtttgtta-gtatgattagatttcttactaagcaacgaacgtgaataag 228  Q
    ||||||||||||||||||||||| |||||||||  ||||||| || || ||||||  ||||||||||||  || |||||||||    
T  44913739 agtttgttacaagttagttaggtaatctagctatatttgttatgtttgtttagatagcttactaagcaagcaatgtgaataag 44913657  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 25479825 - 25479869
Alignment:
Q  147 agtttgttacaagttagttaggtgatctagctaagtttgttagta 191  Q
    ||||||||| ||||||||||||  |||||||||||||| ||||||    
T  25479825 agtttgttaaaagttagttaggaaatctagctaagttttttagta 25479869  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 24413017 - 24412976
Alignment:
Q  147 agtttgttacaagttagttaggtgatctagctaagtttgtta 188  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  24413017 agtttgttacaagttagttaggtaatctagctaagtttgtta 24412976  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 26905357 - 26905400
Alignment:
Q  147 agtttgttacaagttagttaggtgatctagctaagtttgttagt 190  Q
    |||||||||||||||||||||   ||||||||||||||||||||    
T  26905357 agtttgttacaagttagttagaaaatctagctaagtttgttagt 26905400  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 59614 - 59573
Alignment:
Q  149 tttgttacaagttagttaggtgatctagctaagtttgttagt 190  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  59614 tttgttacaagttagttaggaaatcttgctaagtttgttagt 59573  T

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