View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_48 (Length: 252)
Name: NF11375_high_48
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 21050392 - 21050167
Alignment:
| Q |
19 |
agaacaccgatcgacaatcacaaagaaatcaacaaaccactgttcaaataagtgcnnnnnnncataagcgatggcattgcagtggatgatactcacctat |
118 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21050392 |
agaacaccgatcgataatcacgaagaaatcaacaaaccactgttcaaataagtgctttttttcataagcgatggcattgcagtggatgatactcacctat |
21050293 |
T |
|
| Q |
119 |
gtggtggctattgaagctgctgtagcaattcttctaacccttccttcaccaaagcttttgaggaaccgtttgacttctctgatttcgcttattcttcaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21050292 |
gtggtggctattgaagctgctgtagcaattcttctaacccttccttcaccaaagcttttgaggaaccgtttgacttctctgatttcgcttattcttcaac |
21050193 |
T |
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| Q |
219 |
ctgctcttttcattgttccctttgct |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21050192 |
ctgctcttttcattgttccctttgct |
21050167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 26369810 - 26369972
Alignment:
| Q |
82 |
ataagcgatggcattgcagtggatgatactcacctatgtggtggctattgaagctgctgtagcaattcttctaacccttccttcaccaaagcttttgagg |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
26369810 |
ataagcgatggcattgcagtggatgatactcacctatgtggtggctattgaagctgctgtagcgattcttctaacacttccttcaccaaagcttttgagg |
26369909 |
T |
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| Q |
182 |
aaccgtttgacttctctgatttcgcttattcttcaacctgctcttttcattgttccctttgct |
244 |
Q |
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| T |
26369910 |
aaccgtttgacttctctgatttcgcttattcttcaacctgcgcttttcattgttccctttgct |
26369972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 26369762 - 26369814
Alignment:
| Q |
19 |
agaacaccgatcgacaatcacaaag-aaatcaacaaaccactgttcaaataag |
70 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |
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| T |
26369762 |
agaacaccgatcgataatcacaaagaaaatcaacaaaccaccgttcaaataag |
26369814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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