View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_high_63 (Length: 238)
Name: NF11375_high_63
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40850904 - 40850681
Alignment:
| Q |
1 |
cttttgcatctagggttcatcaaggaaacaaggcaaaagaaggaattcatataaatctaaaggtattattattacattgtcatattatgta-cattatat |
99 |
Q |
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| T |
40850904 |
cttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattcacataaatctaaaggtattattattacattgtcatataatgtaactttatat |
40850805 |
T |
|
| Q |
100 |
ttatgtaaaggtaaacttttgccaaaacagtataaatgcaatgtaaactaatttgtaaacctttataataaacagggttttgctattggtaacggattaa |
199 |
Q |
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| T |
40850804 |
tcatgcaaaggtaaacttttgccaaaacagtatcaatgcaatgtaaactaatttgtaaacctttataataaacagggttttgctattggtaacggattaa |
40850705 |
T |
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| Q |
200 |
ccaatccggaaattcagtacaagg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
40850704 |
ccaatccggaaattcagtacaagg |
40850681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 40844812 - 40844694
Alignment:
| Q |
1 |
cttttgcatctagggttcatcaaggaaacaaggcaaaagaaggaattcatataaatctaaaggtattattattacattgtcatattatgt-acattatat |
99 |
Q |
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||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
40844812 |
cttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattcacataaatctaaaggtattattattacattgtcatataatgtaactttatat |
40844713 |
T |
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| Q |
100 |
ttatgtaaaggtaaacttt |
118 |
Q |
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| T |
40844712 |
tcatgcaaaggtaaacttt |
40844694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 40840436 - 40840321
Alignment:
| Q |
1 |
cttttgcatctagggttcatcaaggaaacaaggcaaaagaaggaattcatataaatctaaaggtattattattacattgtcatattatgtacattatatt |
100 |
Q |
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|||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |
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| T |
40840436 |
cttttgcatccagagttcaccaaggaaacaaagcaaaagaaggaattcatataaatctaaaggtatt---attacattgtcatataatgtaacttatatt |
40840340 |
T |
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| Q |
101 |
tatgtaaaggtaaactttt |
119 |
Q |
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|||| |||||||||||||| |
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| T |
40840339 |
tatgaaaaggtaaactttt |
40840321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 40840194 - 40840139
Alignment:
| Q |
165 |
taataaacagggttttgctattggtaacggattaaccaatccggaaattcagtaca |
220 |
Q |
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| T |
40840194 |
taataaacagggctttgctattggtaatggattaaccaatcctgaaattcagtaca |
40840139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 40844641 - 40844582
Alignment:
| Q |
161 |
tttataataaacagggttttgctattggtaacggattaaccaatccggaaattcagtaca |
220 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||| |
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| T |
40844641 |
tttataataaacagggctttgctattggtaatggattaaccaatcctgatattcagtaca |
40844582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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