View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_high_64 (Length: 238)

Name: NF11375_high_64
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_high_64
NF11375_high_64
[»] chr8 (15 HSPs)
chr8 (56-223)||(14318416-14318597)
chr8 (56-223)||(26986790-26986971)
chr8 (56-189)||(34108501-34108634)
chr8 (56-187)||(26981676-26981807)
chr8 (56-189)||(18493978-18494111)
chr8 (56-223)||(14314712-14314893)
chr8 (92-182)||(10340754-10340845)
chr8 (54-137)||(43956649-43956732)
chr8 (54-101)||(10340696-10340743)
chr8 (59-101)||(18608435-18608477)
chr8 (56-112)||(1782181-1782237)
chr8 (189-223)||(26981823-26981857)
chr8 (189-223)||(18494125-18494159)
chr8 (189-223)||(34108453-34108487)
chr8 (190-223)||(10340916-10340949)
[»] chr7 (12 HSPs)
chr7 (56-223)||(12857011-12857192)
chr7 (56-223)||(26051243-26051424)
chr7 (56-223)||(26060602-26060783)
chr7 (56-223)||(26056356-26056537)
chr7 (56-223)||(26065715-26065896)
chr7 (56-189)||(12851946-12852079)
chr7 (90-223)||(14610551-14610698)
chr7 (56-112)||(2248853-2248909)
chr7 (56-110)||(4181276-4181330)
chr7 (54-104)||(35352119-35352169)
chr7 (56-112)||(37459703-37459759)
chr7 (189-223)||(12851898-12851932)
[»] chr6 (7 HSPs)
chr6 (56-223)||(21275995-21276176)
chr6 (57-141)||(11182989-11183073)
chr6 (56-112)||(21936408-21936464)
chr6 (56-133)||(20751881-20751957)
chr6 (58-112)||(12909621-12909675)
chr6 (58-112)||(12934728-12934782)
chr6 (56-141)||(21937943-21938028)
[»] chr5 (12 HSPs)
chr5 (56-223)||(9872225-9872406)
chr5 (56-223)||(9877340-9877521)
chr5 (56-189)||(39904115-39904248)
chr5 (56-223)||(39909180-39909361)
chr5 (56-138)||(13556105-13556187)
chr5 (61-136)||(24091794-24091869)
chr5 (92-149)||(2024354-2024411)
chr5 (56-101)||(2024422-2024467)
chr5 (56-112)||(43540564-43540620)
chr5 (94-183)||(4555870-4555960)
chr5 (56-107)||(4555967-4556018)
chr5 (55-113)||(35368622-35368680)
[»] chr4 (23 HSPs)
chr4 (56-223)||(35091137-35091318)
chr4 (55-223)||(35096250-35096432)
chr4 (56-189)||(32429034-32429168)
chr4 (56-180)||(3424114-3424238)
chr4 (92-189)||(18716809-18716907)
chr4 (92-188)||(18737483-18737580)
chr4 (56-133)||(34279254-34279331)
chr4 (107-189)||(18671159-18671242)
chr4 (103-180)||(3409396-3409474)
chr4 (56-113)||(22119073-22119130)
chr4 (65-138)||(54858987-54859060)
chr4 (56-112)||(47071758-47071814)
chr4 (56-112)||(14643526-14643582)
chr4 (56-101)||(3409329-3409374)
chr4 (55-114)||(25618049-25618108)
chr4 (55-112)||(34601824-34601881)
chr4 (56-138)||(34128122-34128205)
chr4 (60-98)||(18716920-18716958)
chr4 (60-98)||(18737596-18737634)
chr4 (55-112)||(30019637-30019692)
chr4 (92-138)||(14643582-14643628)
chr4 (92-138)||(30019692-30019738)
chr4 (190-223)||(32429242-32429275)
[»] chr3 (32 HSPs)
chr3 (56-223)||(4050030-4050211)
chr3 (56-223)||(4055164-4055345)
chr3 (55-189)||(6852752-6852886)
chr3 (56-223)||(10672739-10672920)
chr3 (56-223)||(10677852-10678033)
chr3 (56-189)||(5481289-5481422)
chr3 (56-189)||(6857856-6857989)
chr3 (55-223)||(10584658-10584840)
chr3 (55-189)||(8465020-8465154)
chr3 (56-223)||(31081308-31081489)
chr3 (60-189)||(10591100-10591229)
chr3 (55-187)||(33702399-33702531)
chr3 (55-223)||(1302044-1302226)
chr3 (56-189)||(8458582-8458715)
chr3 (56-223)||(31076201-31076384)
chr3 (55-189)||(5457816-5457945)
chr3 (55-189)||(49784815-49784950)
chr3 (58-183)||(20891424-20891550)
chr3 (56-153)||(269483-269580)
chr3 (1-55)||(49513926-49513980)
chr3 (56-112)||(29827829-29827885)
chr3 (56-107)||(18023914-18023965)
chr3 (54-182)||(3187244-3187373)
chr3 (58-92)||(18023324-18023358)
chr3 (103-149)||(18023982-18024028)
chr3 (189-223)||(33702547-33702581)
chr3 (191-223)||(10591245-10591277)
chr3 (189-223)||(5457959-5457993)
chr3 (189-223)||(5481436-5481470)
chr3 (189-223)||(6852900-6852934)
chr3 (189-223)||(6858003-6858037)
chr3 (189-223)||(8458534-8458568)
[»] chr2 (12 HSPs)
chr2 (56-223)||(14917183-14917364)
chr2 (56-189)||(17720000-17720133)
chr2 (56-189)||(39178869-39179002)
chr2 (56-223)||(17720327-17720508)
chr2 (56-189)||(45120657-45120790)
chr2 (55-189)||(30283250-30283384)
chr2 (56-110)||(42780542-42780596)
chr2 (92-141)||(20892154-20892203)
chr2 (55-138)||(716634-716716)
chr2 (92-138)||(42780494-42780540)
chr2 (189-223)||(45120609-45120643)
chr2 (68-101)||(20892110-20892143)
[»] chr1 (22 HSPs)
chr1 (56-223)||(28574519-28574700)
chr1 (56-223)||(28598531-28598712)
chr1 (54-189)||(3468338-3468473)
chr1 (55-189)||(43359071-43359206)
chr1 (56-133)||(16051511-16051588)
chr1 (84-182)||(3701293-3701392)
chr1 (57-112)||(17414304-17414359)
chr1 (92-182)||(17414359-17414450)
chr1 (58-112)||(13654676-13654730)
chr1 (58-112)||(35653036-35653090)
chr1 (56-112)||(1188333-1188389)
chr1 (62-112)||(19311180-19311230)
chr1 (94-188)||(3696169-3696264)
chr1 (67-112)||(10186056-10186101)
chr1 (54-110)||(3696109-3696165)
chr1 (60-112)||(10186307-10186359)
chr1 (69-112)||(1188178-1188221)
chr1 (56-91)||(35626556-35626591)
chr1 (189-223)||(3468290-3468324)
chr1 (92-138)||(19311134-19311180)
chr1 (92-141)||(1188129-1188178)
chr1 (56-113)||(21430777-21430833)
[»] scaffold0223 (1 HSPs)
scaffold0223 (56-223)||(1820-2001)
[»] scaffold0006 (1 HSPs)
scaffold0006 (58-112)||(144437-144491)
[»] scaffold0005 (2 HSPs)
scaffold0005 (56-112)||(173710-173766)
scaffold0005 (92-138)||(173664-173710)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 14318416 - 14318597
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14318416 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 14318515  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  14318516 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 14318597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 26986790 - 26986971
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26986790 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26986889  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  26986890 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 26986971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 34108634 - 34108501
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34108634 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 34108535  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  34108534 ataatgaaccatgacattgattcaagtatatatg 34108501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 26981676 - 26981807
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26981676 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26981775  T
Q  156 ataatgaaccatgacattgattcaagtatata 187  Q
    ||||||||||||||||||||||||||||||||    
T  26981776 ataatgaaccatgacattgattcaagtatata 26981807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 18493978 - 18494111
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18493978 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 18494077  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  18494078 ataatgaaccatgacattgattcaagtatatatg 18494111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 14314712 - 14314893
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  14314712 tgttggtgattttcaaaataatggaattactttagaaccaaaagttgtaactcttaatgggaaccattcgtatacattggaacattattatttattatta 14314811  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  14314812 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 14314893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 10340754 - 10340845
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacattgattcaagt 182  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  10340754 accaagagttgtaactcttcatggaaaccattcatatacattggaacattattatttattgatagataatgaaccatgacattgattcaagt 10340845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 43956649 - 43956732
Alignment:
Q  54 aatgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaa 137  Q
    ||||||||||||||  ||||||||||||||||||||||| ||| |||| ||||||||||||| || | ||||||||||||||||    
T  43956649 aatgttggtgatttttaaaataatggaatcactttagaatcaagagttgtaactcttcatggaaatctttcatatacattggaa 43956732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 10340696 - 10340743
Alignment:
Q  54 aatgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  10340696 aatgttggtgatttcccaaataatggaatcactttagaaccaaaagtt 10340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 18608435 - 18608477
Alignment:
Q  59 tggtgatttccaaaataatggaatcactttagaaccaaaagtt 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  18608435 tggtgatttccaaaataatggaatcactttagaactaaaagtt 18608477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 1782237 - 1782181
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||| |||||| ||||||||||||| | |||||||| ||||||||||||||||||    
T  1782237 tgttggagatttctaaaataatggaattattttagaacaaaaagttataactcttca 1782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 26981823 - 26981857
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||||    
T  26981823 gcaaaagggtgcttaatgaatcatggcattgattc 26981857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 18494125 - 18494159
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  18494125 gcaaaagggtgcttaatgaatcatgacattgattc 18494159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 34108487 - 34108453
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  34108487 gcaaaagggtgcttaatgaatcatgacattgattc 34108453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 10340916 - 10340949
Alignment:
Q  190 caaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||| ||||||||||    
T  10340916 caaaagggtgcttaatgaatcatagcattgattc 10340949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 12857192 - 12857011
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857192 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 12857093  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  12857092 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 12857011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 26051424 - 26051243
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26051424 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26051325  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  26051324 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 26051243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 26060783 - 26060602
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060783 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26060684  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  26060683 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 26060602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 26056537 - 26056356
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26056537 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattg 26056438  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  26056437 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 26056356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 26065896 - 26065715
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26065896 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattg 26065797  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  26065796 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 26065715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 12852079 - 12851946
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  12852079 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattgttacattattatttattatta 12851980  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  12851979 ataatgaaccatgacattgattcaagtatatatg 12851946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 14610698 - 14610551
Alignment:
Q  90 gaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaaccatgacattgattcaagtatatat- 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14610698 gaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaaccatgacattgattcaagtatatatg 14610599  T
Q  189 -------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
                 |||||||||||||||||||||||||||||||||||    
T  14610598 gttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 14610551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 2248853 - 2248909
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  2248853 tgttggtgatttctaaaataatggaatcactttagaaccaaaagtagtaactcttca 2248909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 4181276 - 4181330
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactctt 110  Q
    |||||||||||||||||||||||||||||||||| || ||||||||  |||||||    
T  4181276 tgttggtgatttccaaaataatggaatcactttaaaatcaaaagttgcaactctt 4181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 35352119 - 35352169
Alignment:
Q  54 aatgttggtgatttccaaaataatggaatcactttagaaccaaaagttata 104  Q
    |||||||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  35352119 aatgttggtgatttccgaaataatgaaattactttagaatcaaaagttata 35352169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 37459703 - 37459759
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||| |||||||  |||||||||||||||||||| || |||||||| ||||||||||    
T  37459703 tgttagtgatttttaaaataatggaatcactttaaaatcaaaagttttaactcttca 37459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 12851932 - 12851898
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  12851932 gcaaaagggtgcttaatgaatcatgacattgattc 12851898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 21276176 - 21275995
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21276176 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 21276077  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  21276076 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 21275995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 11182989 - 11183073
Alignment:
Q  57 gttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacatt 141  Q
    |||||| ||||| ||||||||||||||| |||||||||||| ||| ||||||||||||| || | ||||||||||||||||||||    
T  11182989 gttggtcatttctaaaataatggaatcaatttagaaccaaatgttgtaactcttcatggaaatctttcatatacattggaacatt 11183073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 21936408 - 21936464
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21936408 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 21936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 20751881 - 20751957
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacatt 133  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||| ||||| ||||||||||||    
T  20751881 tgttggtgatttccaaaataatggattcactttag-atcaaaagttgtaactcttcatgagaacctttcatatacatt 20751957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 12909675 - 12909621
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  12909675 ttggtgatttctaaaataatggaatcactttagaaccaaaagttgtaactcttca 12909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 12934782 - 12934728
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  12934782 ttggtgatttccaaaataatggaatcactctagaaccaaaagttgtaactcttca 12934728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 21938028 - 21937943
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacatt 141  Q
    ||||||||||||||||||||||||||||| |||||||||| ||  | ||||||||||||  ||   ||| ||||||||||||||||    
T  21938028 tgttggtgatttccaaaataatggaatcattttagaaccataatatgtaactcttcatgaaaatatttcgtatacattggaacatt 21937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 9872225 - 9872406
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872225 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 9872324  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  9872325 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 9872406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 9877340 - 9877521
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9877340 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 9877439  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  9877440 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 9877521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 39904248 - 39904115
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39904248 tgttggtgatttccaaaataattgaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 39904149  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  39904148 ataatgaaccatgacattgattcaagtatatatg 39904115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 39909361 - 39909180
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  39909361 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcgtgtaaaccattcatatacattggaacattattatttattatta 39909262  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  39909261 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 39909180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 13556105 - 13556187
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| | |||||||||||||||||    
T  13556105 tgttggtgatttccaaaataatggaatcactttaaaaccaagagttgtaactcttcatgggaatctttcatatacattggaac 13556187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 24091794 - 24091869
Alignment:
Q  61 gtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattgga 136  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||||||| ||| ||| | |||||||||||||||    
T  24091794 gtgatttccaaaataatagaatcactttagaaccaagagttgtaactctttatgagaatctttcatatacattgga 24091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 2024411 - 2024354
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacattattattta 149  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2024411 accaagagttgtaactcttcacgggaaccattcatatacattggaacattattattta 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 2024467 - 2024422
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2024467 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 2024422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 43540564 - 43540620
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  43540564 tgttggtgatttccaaaataattgaatcaatttagaaccaaaagttgtaactcttca 43540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 4555960 - 4555870
Alignment:
Q  94 caaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagta 183  Q
    ||||||||||| ||||||| || || ||||||||||||||| || ||||||||||| ||||  ||| |||||||| |||||||||||||||    
T  4555960 caaaagttatacctcttcacggaaatcattcatatacattgaaaaattattatttacttatagatagtgaaccataacattgattcaagta 4555870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 4556018 - 4555967
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataact 107  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  4556018 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaact 4555967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 35368622 - 35368680
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcat 113  Q
    |||||||| ||||| |||| |||||||||||||||||| |||||||| ||||| |||||    
T  35368622 atgttggtaatttctaaaagaatggaatcactttagaatcaaaagttgtaacttttcat 35368680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 35091318 - 35091137
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091318 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 35091219  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  35091218 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 35091137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 35096432 - 35096250
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096432 atgttggtgatttccaaaataatggaatcactttagaacaaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 35096333  T
Q  155 aataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  35096332 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 35096250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 32429034 - 32429168
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-att 154  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||     
T  32429034 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgata 32429133  T
Q  155 aataatgaaccatgacattgattcaagtatatatg 189  Q
     |||||||||||||||| |||||||||| ||||||    
T  32429134 gataatgaaccatgacaatgattcaagtgtatatg 32429168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 3424114 - 3424238
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-att 154  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||     
T  3424114 tgtttgtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaacca-tcatatacattggaacattattatttattgata 3424212  T
Q  155 aataatgaaccatgacattgattcaa 180  Q
     |||||||||||||||||||||||||    
T  3424213 gataatgaaccatgacattgattcaa 3424238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 18716907 - 18716809
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| ||||||    
T  18716907 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatg 18716809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 18737580 - 18737483
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatat 188  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||    
T  18737580 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatat 18737483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 34279254 - 34279331
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacatt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| ||||||||||||||    
T  34279254 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtttcaattcttcatgggaatcattcatatacatt 34279331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 18671242 - 18671159
Alignment:
Q  107 tcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||| ||||||    
T  18671242 tcttcatgggaaccattcatatacattggtacattattatttattgataaataatgaaccatgacattgatttaagtgtatatg 18671159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 3409396 - 3409474
Alignment:
Q  103 taactcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacattgattcaa 180  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  3409396 taactcttcatgagaaccattcatatacattggaacattattatttattgatagataatgaaccatgacattgattcaa 3409474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 22119130 - 22119073
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcat 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  22119130 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtaactcttcat 22119073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 54858987 - 54859060
Alignment:
Q  65 tttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    ||||||||||||| ||||||||||| |||||||| || ||||||||||| |||| |||||||||||||||||||    
T  54858987 tttccaaaataatagaatcactttacaaccaaaaattgtaactcttcattggaatcattcatatacattggaac 54859060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 47071814 - 47071758
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  47071814 tgttggtgatttccaaaataatggaatcactttacaaccaaaagttgtaactcttca 47071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 14643526 - 14643582
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||    
T  14643526 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 14643582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 3409329 - 3409374
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  3409329 tgttggtgatttccaaaataatggaatcactttagaactaaaagtt 3409374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 25618049 - 25618108
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatg 114  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||| ||||| ||||||    
T  25618049 atgttggtgatttccaaaatattggaatcactttagaactaagagttgtaactgttcatg 25618108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 34601824 - 34601881
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||||    
T  34601824 atgttggtgatttctaaaataatggaatcattttagaactaaaagttgtaacttttca 34601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 34128122 - 34128205
Alignment:
Q  56 tgttggtgatttccaaaa-taatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||| |||||||   || ||| | |||||||| ||||||||    
T  34128122 tgttggtgatttccaaaaattatggaatcattttagaaccaaaagttgtaactctctgtgagaatctttcatatatattggaac 34128205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 18716958 - 18716920
Alignment:
Q  60 ggtgatttccaaaataatggaatcactttagaaccaaaa 98  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  18716958 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 18737634 - 18737596
Alignment:
Q  60 ggtgatttccaaaataatggaatcactttagaaccaaaa 98  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  18737634 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18737596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 30019637 - 30019692
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||| ||||||||||||||||||||||| |  ||||| ||||||||||    
T  30019637 atgttggtgatttctaaaataatggaatcactttagaatc--aagttgtaactcttca 30019692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 14643582 - 14643628
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    ||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  14643582 accaagagttgtaactattcatgggaatcattcatatacattggaac 14643628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 30019692 - 30019738
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    ||||| |||| |||||||||||||||| | |||||||||||||||||    
T  30019692 accaagagttgtaactcttcatgggaatctttcatatacattggaac 30019738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 32429242 - 32429275
Alignment:
Q  190 caaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||| |||||||||||||||||||||||||||||    
T  32429242 caaaggggtgcttaatgaatcatggcattgattc 32429275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 4050211 - 4050030
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050211 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 4050112  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  4050111 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 4050030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 4055345 - 4055164
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4055345 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 4055246  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  4055245 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 4055164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 6852752 - 6852886
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852752 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 6852851  T
Q  155 aataatgaaccatgacattgattcaagtatatatg 189  Q
    |||||||||||||||||||||||||||||||||||    
T  6852852 aataatgaaccatgacattgattcaagtatatatg 6852886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 10672739 - 10672920
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672739 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 10672838  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  10672839 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 10672920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 10677852 - 10678033
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10677852 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 10677951  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  10677952 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 10678033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 5481289 - 5481422
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5481289 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 5481388  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  5481389 ataatgaaccatgacattgattcaagtatatatg 5481422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 6857856 - 6857989
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857856 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 6857955  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  6857956 ataatgaaccatgacattgattcaagtatatatg 6857989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 10584658 - 10584840
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584658 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 10584757  T
Q  155 aataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||| |||||||              |||||||||||||||||||||||||||||||||||    
T  10584758 aataatgaaccatgacattgattcaaatatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 10584840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 8465154 - 8465020
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8465154 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 8465055  T
Q  155 aataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||| |||||||||||||    
T  8465054 aataatgaaccatgacattgactcaagtatatatg 8465020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 31081308 - 31081489
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081308 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatgggaaccattcatatacattggaacattattatttattatta 31081407  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  31081408 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 31081489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 10591100 - 10591229
Alignment:
Q  60 ggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattattaataa 159  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591100 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattaataa 10591199  T
Q  160 tgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||    
T  10591200 tgaaccatgacattgattcaagtatatatg 10591229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 33702399 - 33702531
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33702399 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacataggaacattattatttattatt 33702498  T
Q  155 aataatgaaccatgacattgattcaagtatata 187  Q
    |||||||||||||||||||||||||||||||||    
T  33702499 aataatgaaccatgacattgattcaagtatata 33702531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 1302044 - 1302226
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1302044 atgttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatatattggaacattattatttattatt 1302143  T
Q  155 aataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  1302144 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 1302226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 8458715 - 8458582
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458715 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 8458616  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    |||||||||||| |||||||||||||||||||||    
T  8458615 ataatgaaccataacattgattcaagtatatatg 8458582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 31076201 - 31076384
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttat--tat 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||  |||    
T  31076201 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatggaaaccattcatatacattggaacattattatttattgtat 31076300  T
Q  154 taataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  31076301 taataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 31076384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 5457816 - 5457945
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    ||||||||||||||||||||||||||||     ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5457816 atgttggtgatttccaaaataatggaat-----tagaatcaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 5457910  T
Q  155 aataatgaaccatgacattgattcaagtatatatg 189  Q
    |||||||||||||||||||||||||||||||||||    
T  5457911 aataatgaaccatgacattgattcaagtatatatg 5457945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 49784950 - 49784815
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-at 153  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||    
T  49784950 atgttggtgatttccaaaataatagaatcactttaaaaccaaaagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgat 49784851  T
Q  154 taataatgaaccatgacattgattcaagtatatatg 189  Q
      ||||||||||||||||||||||||||| ||||||    
T  49784850 agataatgaaccatgacattgattcaagtgtatatg 49784815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 20891550 - 20891424
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| || ||||||||||| | ||  |    
T  20891550 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaatcattcatatacattgaaaaattattatttactgataga 20891451  T
Q  157 taatgaaccatgacattgattcaagta 183  Q
    ||||||||||| |||||||||||||||    
T  20891450 taatgaaccataacattgattcaagta 20891424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 269580 - 269483
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattat 153  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  269580 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttgtagctctttatggaaaccattcatatatattggaacattattatttattat 269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49513926 - 49513980
Alignment:
Q  1 atacatggtaagctgtgaaggcaaacatgattcactttcgtatgtcataagtcaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49513926 atacatggtaagctgtgaaggcaaacatgattcactttcgtatttcataagtcaa 49513980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 29827885 - 29827829
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  29827885 tgttggtgatttccaaaagaatggaatcactttagaatcaaaagttgtaactcttca 29827829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 18023914 - 18023965
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataact 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  18023914 tgttggtgatttccaaaataatggaatcactttataaccaaaagttgtaact 18023965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 3187244 - 3187373
Alignment:
Q  54 aatgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-tta 152  Q
    |||||| |||||||  |||| ||| ||||||||||| || |||||||| ||| | || ||| ||| ||||||||| |||||||||| ||||||||| | |    
T  3187244 aatgtttgtgatttttaaaacaattgaatcactttaaaatcaaaagttgtaattttttatgagaatcattcatatgcattggaacaatattatttactga 3187343  T
Q  153 ttaataatgaaccatgacattgattcaagt 182  Q
    |  ||||||||| || ||||||||||||||    
T  3187344 tagataatgaactataacattgattcaagt 3187373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 18023324 - 18023358
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaa 92  Q
    |||||||||||||||||||||||||||||||||||    
T  18023324 ttggtgatttccaaaataatggaatcactttagaa 18023358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 18023982 - 18024028
Alignment:
Q  103 taactcttcatgggaaccattcatatacattggaacattattattta 149  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||    
T  18023982 taactcttcataggaatcaatcatatacattggaacattattattta 18024028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 33702547 - 33702581
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||||    
T  33702547 gcaaaagggtgcttaatgaatcatggcattgattc 33702581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 10591245 - 10591277
Alignment:
Q  191 aaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||    
T  10591245 aaaagggtgcttaatgaatcatggcattgattc 10591277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 5457959 - 5457993
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  5457959 gcaaaagggtgcttaatgaatcatgacattgattc 5457993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 5481436 - 5481470
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  5481436 gcaaaagggtgcttaatgaatcatgacattgattc 5481470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 6852900 - 6852934
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||| ||||||||||||||||||||    
T  6852900 gcaaaagggtgcttgatgaatcatggcattgattc 6852934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 6858003 - 6858037
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||| ||||||||||||||||||||    
T  6858003 gcaaaagggtgcttgatgaatcatggcattgattc 6858037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 8458568 - 8458534
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||| |||||||||||||||||||||||    
T  8458568 gcaaaagggtggttaatgaatcatggcattgattc 8458534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 14917183 - 14917364
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14917183 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 14917282  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  14917283 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 14917364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 17720000 - 17720133
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17720000 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaactattcatatacattggaacattattatttattatta 17720099  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  17720100 ataatgaaccatgacattgattcaagtatatatg 17720133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 39179002 - 39178869
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39179002 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 39178903  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  39178902 ataatgaaccatgacattgattcaagtatatatg 39178869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 17720327 - 17720508
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17720327 tgttggtgatttccaaaataatagaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 17720426  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||| ||||||||||              |||||||||||||||||||||||||||||||||||    
T  17720427 ataatgaaccatgacattgattgaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 17720508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 45120790 - 45120657
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45120790 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactcttcatgggaaccattcatatacattgaaacattattatttattatta 45120691  T
Q  156 ataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  45120690 ataatgaaccatgacattgattcaagtatatatg 45120657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 30283250 - 30283384
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 154  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30283250 atgttggtgatttccaaaataatggaatcattttagaaccaaaagttgtaactcttcatgggaaccattcatgtacattggaacattattatttattatt 30283349  T
Q  155 aataatgaaccatgacattgattcaagtatatatg 189  Q
     ||| ||||||||||||||||||||||||||||||    
T  30283350 gatactgaaccatgacattgattcaagtatatatg 30283384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 42780596 - 42780542
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactctt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  42780596 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttactctt 42780542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 20892154 - 20892203
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacatt 141  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  20892154 accaagagttgtaactcttcatgagaaccattcatatacattggaacatt 20892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 716716 - 716634
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    |||||| ||||||  ||||||||||||||| ||||||   ||||||| |||||||| ||| ||| | |||||||||||||||||    
T  716716 atgttgatgatttttaaaataatggaatcattttagatt-aaaagttgtaactctttatgtgaatctttcatatacattggaac 716634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 42780540 - 42780494
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    |||||||||| |||||||||||| ||| | |||||||||||||||||    
T  42780540 accaaaagttgtaactcttcatgagaatctttcatatacattggaac 42780494  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 45120643 - 45120609
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  45120643 gcaaaagggtgcttaatgaatcatgacattgattc 45120609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 20892110 - 20892143
Alignment:
Q  68 ccaaaataatggaatcactttagaaccaaaagtt 101  Q
    |||||||||||||||||||||| |||||||||||    
T  20892110 ccaaaataatggaatcactttaaaaccaaaagtt 20892143  T

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Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 28574700 - 28574519
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574700 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 28574601  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  28574600 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 28574519  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 28598712 - 28598531
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598712 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 28598613  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  28598612 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 28598531  T

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Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 3468473 - 3468338
Alignment:
Q  54 aatgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattat 153  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  3468473 aatgttggtgatttccaaaataatggaatcattttagaatcaaaagttgtaattcttcataggaaccattcatatacattggaacattattatttattat 3468374  T
Q  154 taataatgaaccatgacattgattcaagtatatatg 189  Q
    ||||||||||||||||||||||||||||||||||||    
T  3468373 taataatgaaccatgacattgattcaagtatatatg 3468338  T

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Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 43359206 - 43359071
Alignment:
Q  55 atgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-at 153  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||    
T  43359206 atgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatgagaatcattcatatacattggaacattattatttattgat 43359107  T
Q  154 taataatgaaccatgacattgattcaagtatatatg 189  Q
    | |||||||||||||| |||||||||||| ||||||    
T  43359106 tgataatgaaccatgatattgattcaagtgtatatg 43359071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 16051588 - 16051511
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacatt 133  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  16051588 tgttggtgatttctaaaataatggaatcactttagaaccaaaagttataactctttatgggaatcattcatatacatt 16051511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 3701293 - 3701392
Alignment:
Q  84 actttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagt 182  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| || || ||||||||||||  |||||||||||||    
T  3701293 actttagaaccaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataatgaaccatagcattgattcaagt 3701392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 17414304 - 17414359
Alignment:
Q  57 gttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  17414304 gttggtgatttccaaaataatggaatcactttagaaccaaaacttgtaactcttca 17414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 17414359 - 17414450
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagt 182  Q
    |||||||||| |||||||||||  ||| |||||||||||||| ||||||||||||||| || || ||||||||||||  |||||||||||||    
T  17414359 accaaaagttgtaactcttcattagaatcattcatatacattagaacattattatttactaatagataatgaaccatagcattgattcaagt 17414450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 13654730 - 13654676
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13654730 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 13654676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 35653036 - 35653090
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  35653036 ttggtgatttccaaaataatggaatcactttggaaccaaaagttgtaactcttca 35653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 1188389 - 1188333
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  1188389 tgttggtgatttccaaaataatggaatcactttagaaccaaaaattgtaacttttca 1188333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 19311230 - 19311180
Alignment:
Q  62 tgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  19311230 tgatttccaaaataatggaatcactttataaccaaaagttgtaactcttca 19311180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 3696169 - 3696264
Alignment:
Q  94 caaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatat 188  Q
    ||||||||  |||| |||||||||| ||||||||||||||  ||||||||||||||   || ||||||||||||| | |||||||||||| |||||    
T  3696169 caaaagttgcaacttttcatgggaatcattcatatacattaaaacattattatttaccgataaataatgaaccataatattgattcaagtttatat 3696264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 10186101 - 10186056
Alignment:
Q  67 tccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||    
T  10186101 tccaaaataatggaatcactttagaatcaaaagttgtaactcttca 10186056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 3696109 - 3696165
Alignment:
Q  54 aatgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactctt 110  Q
    ||||||||| ||||| ||||||||||||||||||| ||| |||||||| ||||||||    
T  3696109 aatgttggtaatttctaaaataatggaatcactttggaatcaaaagttgtaactctt 3696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 10186307 - 10186359
Alignment:
Q  60 ggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||| |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  10186307 ggtgctttccaaaataatggaatcactttagactcaaaagttttaactcttca 10186359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 1188221 - 1188178
Alignment:
Q  69 caaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  1188221 caaaataatggaatcactttagaaccaaaagttgtaacttttca 1188178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 35626591 - 35626556
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttaga 91  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35626591 tgttggtgatttctaaaataatggaatcactttaga 35626556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 3468324 - 3468290
Alignment:
Q  189 gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  3468324 gcaaaagggtgcttaatgaatcatgacattgattc 3468290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 19311180 - 19311134
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    ||||| |||| |||||||||||||||| | |||||||||||||||||    
T  19311180 accaagagttgtaactcttcatgggaatctttcatatacattggaac 19311134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 1188178 - 1188129
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaacatt 141  Q
    ||||| |||| ||||| |||||||||| | ||||||||||||||||||||    
T  1188178 accaagagttgtaactattcatgggaatctttcatatacattggaacatt 1188129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 21430777 - 21430833
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcat 113  Q
    |||||||||||| ||||||||| |||||| ||||| | |||||||| |||||||||||    
T  21430777 tgttggtgattttcaaaataatagaatcattttag-atcaaaagttgtaactcttcat 21430833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 1820 - 2001
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 155  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1820 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtatctcttcatgggaaccattcatatacattggaacattactatttattatta 1919  T
Q  156 ataatgaaccatgacattgattcaagtatatat--------------gcaaaagggtgcttaatgaatcatggcattgattc 223  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  1920 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattc 2001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 144491 - 144437
Alignment:
Q  58 ttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  144491 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 173766 - 173710
Alignment:
Q  56 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttataactcttca 112  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||    
T  173766 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 173710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 173710 - 173664
Alignment:
Q  92 accaaaagttataactcttcatgggaaccattcatatacattggaac 138  Q
    ||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  173710 accaagagttgtaactattcatgggaatcattcatatacattggaac 173664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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