View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_1 (Length: 1085)
Name: NF11375_low_1
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 33931584 - 33931151
Alignment:
| Q |
18 |
gagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33931584 |
gagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaa |
33931485 |
T |
|
| Q |
118 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagta |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
33931484 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataaca |
33931385 |
T |
|
| Q |
218 |
atgatgcagtgatatgttatcttttgattcgtttatgtgtaaatatcttctgtagagtagatgagttgattttattgatttatttacatacaaaacaaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931384 |
atgatgcagtgatatgttatcttttgattcgtttatgtgtaaatatcttctgtagagtagatgagttgattttattgatttatttacatacaaaacaaat |
33931285 |
T |
|
| Q |
318 |
taataaaatttctgtgtataaacaaacttcttttatgctttgtaatttcttaatctgtatgagtacatgtgtttgtttttctttttaaaaacaaaacagt |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33931284 |
taataaaatttctgtgtataaacaaacttcttttatgctttgtaatttcttaatctgtatgagtacatgtgtttgtttttcttttcaaaaacaaaacagt |
33931185 |
T |
|
| Q |
418 |
tcttacttgttactcaataaggagagtaatggaa |
451 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
33931184 |
tcttacttgttactcaataaggagagtaatggaa |
33931151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 440 - 711
Target Start/End: Complemental strand, 33931130 - 33930860
Alignment:
| Q |
440 |
agagtaatggaaaacatggagagtaaaagtgtctttactatggagagtaaaagggactacatgtggaagaaagaaaatagtttgtggagatcgaattttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33931130 |
agagtaatggaaaacatggagagtaaaagtgtctttactatagagagtaaaagggactacatgtggaagaaagaaaatagtttgtggagatcgaattttt |
33931031 |
T |
|
| Q |
540 |
taaaaatctataggtttaaaaatagttgaaaattatataggtaaacatttagaataaatcttcaatttagtctctagtctgtcaattttatcccttaatt |
639 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33931030 |
taaaaatctataggtttaaaaatagttgaaaattatataggtaaacatttagaataaatcttcaatttagtctctagtctgtcaattttattccttaatt |
33930931 |
T |
|
| Q |
640 |
atattaaaatccatcaaatttgttcataaccttttaacagtagagactaaattgacatattttatatagttt |
711 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
33930930 |
ata-taaaatccatcaaatttgttcataagcttttaatagtagagactaaactgacatattttatatagttt |
33930860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 33938389 - 33938177
Alignment:
| Q |
18 |
gagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33938389 |
gagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaa |
33938290 |
T |
|
| Q |
118 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
33938289 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataaca |
33938190 |
T |
|
| Q |
218 |
atgatgcagtgat |
230 |
Q |
| |
|
||||||||||||| |
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|
| T |
33938189 |
atgatgcagtgat |
33938177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 848 - 1012
Target Start/End: Complemental strand, 33930774 - 33930621
Alignment:
| Q |
848 |
gtgaaagaatacgtgttatacactctctttcattttaggaagagggtcaaaagacaaaagaatgtgctaaatatcggcacatttcaacnnnnnnnnnnnn |
947 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
33930774 |
gtgaaagaatacgtgttatacactctctttcattttaggaagagggtcaaaagacaaaagaatgtgctaaatattggcacatttcaactttatttttt-- |
33930677 |
T |
|
| Q |
948 |
nnnnnnnncaaaccatcgtccacatgctttgtaaaaaataatatcctcaagataatggggatcaa |
1012 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33930676 |
---------aaaccatcgtccacatgctttgtaaaaaataatatcctcaagataatccggatcaa |
33930621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1015 - 1070
Target Start/End: Complemental strand, 33930596 - 33930541
Alignment:
| Q |
1015 |
aaggttcattcaaggagttgacatctcaactattgactgcttgtctcacatgatgt |
1070 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
33930596 |
aaggttcattcaaggagttgacatttcgactattgactgcttgtctcacataatgt |
33930541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 790
Target Start/End: Complemental strand, 33930865 - 33930831
Alignment:
| Q |
756 |
tagtttctgaactaaattatggtaaattcctcacc |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33930865 |
tagtttctgaactaaattatggtaaattcctcacc |
33930831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 42840002 - 42839791
Alignment:
| Q |
18 |
gagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaa |
117 |
Q |
| |
|
|||||||| |||| ||||| |||||||| ||||| ||||| ||||||||| ||| |||||| | |||||||| |||||||||||||||||| | || |
|
|
| T |
42840002 |
gagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaagagtttgaagaggatgttgaa |
42839903 |
T |
|
| Q |
118 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagta |
217 |
Q |
| |
|
||| |||| || |||||||| ||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||| || |||| | | |
|
|
| T |
42839902 |
aaagttgggggattctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagagttcagaatc |
42839803 |
T |
|
| Q |
218 |
atgatgcagtga |
229 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
42839802 |
atgatggagtga |
42839791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 42849797 - 42849603
Alignment:
| Q |
18 |
gagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaa |
117 |
Q |
| |
|
|||||||| |||| ||||| |||||||| ||||| ||||| |||||||||| ||| ||||| || |||||||| || ||||||||||||||| | || |
|
|
| T |
42849797 |
gagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaa |
42849698 |
T |
|
| Q |
118 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
212 |
Q |
| |
|
|| |||| || |||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42849697 |
aaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42849603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 42846810 - 42846616
Alignment:
| Q |
18 |
gagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaa |
117 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||||| ||||| |||||||||| ||| ||||| || ||||| || || ||||||||||||||| | || |
|
|
| T |
42846810 |
gagaggaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaaaagtttgaagaggatgttgaa |
42846711 |
T |
|
| Q |
118 |
gaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
212 |
Q |
| |
|
|| |||| || |||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42846710 |
aaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42846616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 681 - 719
Target Start/End: Complemental strand, 18044147 - 18044109
Alignment:
| Q |
681 |
agagactaaattgacatattttatatagtttaaagatta |
719 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
18044147 |
agagactaaattgacaaattttatatattttaaagatta |
18044109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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