View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_12 (Length: 521)

Name: NF11375_low_12
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_12
NF11375_low_12
[»] chr3 (1 HSPs)
chr3 (18-521)||(49513306-49513801)
[»] chr4 (5 HSPs)
chr4 (269-380)||(27744743-27744857)
chr4 (390-506)||(27745302-27745418)
chr4 (49-178)||(27744488-27744629)
chr4 (168-211)||(27744643-27744686)
chr4 (304-383)||(38529589-38529668)


Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Original strand, 49513306 - 49513801
Alignment:
Q  18 agaccctcgttttcgacaagagaggtgcccgtagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagtagaagaagaacaagagg 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49513306 agaccctctttttcgacaagagaggtgcccgtagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagtagaagaagaacaagagg 49513405  T
Q  118 gattgatggaggagcatgttaaaggagtagagaatgaatcaaattctactacagatgaagatactgacacacttgatatgcaggtactgttatgagcaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  49513406 gattgatggaggagcatgttaaaggagtagagaatgaatcaaattctactacagatgaagatactga-----------tgcaggtactgttatgagcaaa 49513494  T
Q  218 attcgaaatgtctcgtctggtattttcaaatatatcacttctttttaatcattattagtgtt---gttgttgttataaaataggaacacgaagaggtatc 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  49513495 attcgaaatgtctcgtctggtattttcaaatctatcacttctttttaatcattattagtgttgttgttgttgttataaaataggaacacgaagaggtatc 49513594  T
Q  315 agtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtatgtaagtcaacatttggaattgaatattgtta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49513595 agtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtatgtaagtcaacatttggaatttaatattgtta 49513694  T
Q  415 aacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgtaaacatggtgaataag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49513695 aacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgtaaacatggtgaataag 49513794  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 27744743 - 27744857
Alignment:
Q  269 ttattagtgttgttgttgttataaaataggaacacgaaga---ggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaa 365  Q
    ||||||||||| |||||||||| |||||||| || |||||   |||||| |||||||| ||||||||| ||||||| ||||||||| |||||||||||||    
T  27744743 ttattagtgtttttgttgttattaaataggatcaggaagacgaggtatcggtgattgataaagatacttataggcttgctgttgtcaacatggactggaa 27744842  T
Q  366 ctatgtgaaggtgtg 380  Q
    |||||||||||||||    
T  27744843 ctatgtgaaggtgtg 27744857  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 390 - 506
Target Start/End: Original strand, 27745302 - 27745418
Alignment:
Q  390 caacatttggaattgaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaa 489  Q
    |||||||| |||||||| |||||| ||||||| |||||| ||||||| |||||  |||||||||||||||| |||||||| | |||||||||||| || |    
T  27745302 caacatttagaattgaagattgttgaacttccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaaga 27745401  T
Q  490 gtaatgtgtaaacatgg 506  Q
    |||||||||||||||||    
T  27745402 gtaatgtgtaaacatgg 27745418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 27744488 - 27744629
Alignment:
Q  49 tagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagtagaagaaga------------acaagagggattgatggaggagcatgt 136  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            | |||||| ||||||||| ||  |||     
T  27744488 tagaaaacaacctcactttaaaatctgattttcttcgccattactacaaagtagaagaagaagaagaagaaggaaaagaggaattgatggatgataatga 27744587  T
Q  137 taaaggagtagagaatgaatcaaattctactacagatgaaga 178  Q
    ||||| || ||||||||||||||||||||||||||| |||||    
T  27744588 taaagcagcagagaatgaatcaaattctactacagacgaaga 27744629  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 27744643 - 27744686
Alignment:
Q  168 acagatgaagatactgacacacttgatatgcaggtactgttatg 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  27744643 acagatgaagatactgacacacttgatatgcaggtacttttatg 27744686  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 38529668 - 38529589
Alignment:
Q  304 gaagaggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtat 383  Q
    ||||||||| ||| |||||||||||| || |||||| ||||||||||  | |||||||||   |||||||||||| ||||    
T  38529668 gaagaggtagcagagattgagaaagaaacacataggttggctgttgttaatatggactggcggtatgtgaaggtgcgtat 38529589  T

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