View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_15 (Length: 454)
Name: NF11375_low_15
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 85 - 434
Target Start/End: Complemental strand, 1412506 - 1412162
Alignment:
| Q |
85 |
cagctacagccatggtataataataatgataattcccaaacaattgaacatgcacagtaacagcaaagtggtggaattcaattggaaataacatggcagc |
184 |
Q |
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| T |
1412506 |
cagctacagccatggcataataataatgataattcccaaacaattgaacatgcacactatcagcaaagtggtggaatttaattggaaataacatggcagc |
1412407 |
T |
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| Q |
185 |
agcaattacacttggcaataaaggattttaatttgaaatagaatgataaaactatattaggagcaatcgaaattaaatagaatggtactaccgaatactt |
284 |
Q |
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| T |
1412406 |
agcaattacacttggcaataaaggattttaatttgaaatagaatgataaaacgatattaggagcaatcgaaattaaatagaatggtactacc--atactt |
1412309 |
T |
|
| Q |
285 |
aatagatttgcataaaaataaaggttatgaataatacttaagacaaaacaaaatagtggagtgggtaataaacaaaattgatttgttattcataaaaata |
384 |
Q |
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| T |
1412308 |
aatagatttgcataaaaataaaggttatgaataatacttaagacaaaacaaaatagtggagtgggtaataaaaaaaattgattagttattgatagaaata |
1412209 |
T |
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| Q |
385 |
atcgggctttcaagctacccggagcccggccgggctatcccgccacgggc |
434 |
Q |
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| T |
1412208 |
atcgggctttcgagcta---tgggcccggccgggctatcccgccacgggc |
1412162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1412536 - 1412499
Alignment:
| Q |
1 |
agttggaaacattaaatggataagaaagaacagctaca |
38 |
Q |
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| T |
1412536 |
agttggaaacattaaatggataagaaagaacagctaca |
1412499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 15975666 - 15975549
Alignment:
| Q |
321 |
cttaagacaaaacaaaatagtggagtgggtaat----aaacaaaattgatttgttattcataaaaataatcgggctttcaagctacccggagcccggccg |
416 |
Q |
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| T |
15975666 |
cttaagacaaaacaaaacagtggagtggggaattacaaaaaaaaattgattagtgattaataaaaatagtcgggcttttgggctacctggagcccggtcg |
15975567 |
T |
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| Q |
417 |
ggctatcccgccacgggc |
434 |
Q |
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| T |
15975566 |
ggctagcccgccacgggc |
15975549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 12378584 - 12378554
Alignment:
| Q |
46 |
tagctaatgaaaagcaatgaattttttcctt |
76 |
Q |
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| T |
12378584 |
tagctaatgaaaagcaatgaattttttcctt |
12378554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 41197332 - 41197302
Alignment:
| Q |
46 |
tagctaatgaaaagcaatgaattttttcctt |
76 |
Q |
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| T |
41197332 |
tagctaatgaaaagcaatgaattttttcctt |
41197302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 43989234 - 43989204
Alignment:
| Q |
46 |
tagctaatgaaaagcaatgaattttttcctt |
76 |
Q |
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| T |
43989234 |
tagctaatgaaaagcaatgaattttttcctt |
43989204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 36685040 - 36685070
Alignment:
| Q |
46 |
tagctaatgaaaagcaatgaattttttcctt |
76 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36685040 |
tagctaatgaaaagcaatgaattttttcctt |
36685070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 51976895 - 51976925
Alignment:
| Q |
46 |
tagctaatgaaaagcaatgaattttttcctt |
76 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
51976895 |
tagctaatgaaaagcaatgaattttttcctt |
51976925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 11351573 - 11351543
Alignment:
| Q |
46 |
tagctaatgaaaagcaatgaattttttcctt |
76 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
11351573 |
tagctaatgaaaagcaatgaattttttcctt |
11351543 |
T |
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