View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_16 (Length: 440)
Name: NF11375_low_16
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 41534002 - 41533918
Alignment:
| Q |
344 |
atgtttatgttttttcttttgtaaacttctctctgtctgttttctgaagcttactacgaacagatccctatttcttcatttttct |
428 |
Q |
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| T |
41534002 |
atgtttatgttttttcttttgtaaacttctctctgtctgttttctgaagcttactacgaacagatccctatttcttcatttttct |
41533918 |
T |
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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 41534266 - 41534197
Alignment:
| Q |
93 |
tgatgcgcaaattagcatcatcacacacaaacaggtaatactacgcaccacactcaagataacgctaata |
162 |
Q |
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| T |
41534266 |
tgatgcgcaaattagcatcatcacacacaaacaggtaatactacgcaccacactcaagataacgctaata |
41534197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 41534327 - 41534281
Alignment:
| Q |
22 |
acctcacctcacgactttgattgaaagaaagaagaatttgcattacc |
68 |
Q |
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| T |
41534327 |
acctcacctcacgactttgattgaaagaaagaagaatttgcattacc |
41534281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 41542553 - 41542516
Alignment:
| Q |
27 |
acctcacgactttgattgaaagaaagaagaatttgcat |
64 |
Q |
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| T |
41542553 |
acctcacgactttgaaagaaagaaagaagaatttgcat |
41542516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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