View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_18 (Length: 417)

Name: NF11375_low_18
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_18
NF11375_low_18
[»] chr8 (17 HSPs)
chr8 (105-344)||(28299843-28300079)
chr8 (173-298)||(38668181-38668306)
chr8 (273-355)||(33827806-33827888)
chr8 (221-366)||(35643605-35643748)
chr8 (224-366)||(29520789-29520931)
chr8 (294-351)||(29717249-29717306)
chr8 (221-349)||(490492-490620)
chr8 (281-353)||(41971847-41971919)
chr8 (283-343)||(43904724-43904784)
chr8 (283-366)||(17491713-17491796)
chr8 (264-355)||(30559844-30559935)
chr8 (224-367)||(35914601-35914744)
chr8 (312-366)||(4011223-4011277)
chr8 (305-366)||(13589619-13589680)
chr8 (246-339)||(21425213-21425306)
chr8 (313-365)||(24558624-24558676)
chr8 (281-353)||(42584512-42584584)
[»] chr7 (19 HSPs)
chr7 (99-354)||(23086970-23087232)
chr7 (221-353)||(36101774-36101906)
chr7 (221-353)||(27893560-27893692)
chr7 (281-349)||(35922410-35922478)
chr7 (283-366)||(37976375-37976458)
chr7 (283-366)||(45601616-45601699)
chr7 (312-366)||(28628021-28628075)
chr7 (312-353)||(28542032-28542073)
chr7 (311-355)||(28562453-28562497)
chr7 (283-366)||(36239855-36239938)
chr7 (224-355)||(40979928-40980059)
chr7 (288-366)||(1569156-1569234)
chr7 (316-365)||(29653638-29653687)
chr7 (305-366)||(43281971-43282032)
chr7 (278-366)||(3457501-3457589)
chr7 (305-345)||(4066925-4066965)
chr7 (369-409)||(5335840-5335880)
chr7 (305-349)||(28355322-28355366)
chr7 (221-309)||(44951352-44951440)
[»] chr5 (12 HSPs)
chr5 (115-366)||(23980084-23980341)
chr5 (100-209)||(32759885-32759994)
chr5 (149-355)||(33157747-33157962)
chr5 (248-328)||(41808100-41808180)
chr5 (241-355)||(9235198-9235311)
chr5 (273-355)||(14725669-14725751)
chr5 (107-197)||(20076410-20076500)
chr5 (319-366)||(15489587-15489634)
chr5 (312-355)||(28186863-28186906)
chr5 (284-349)||(32759733-32759798)
chr5 (312-353)||(39322154-39322195)
chr5 (305-353)||(36200882-36200930)
[»] chr1 (19 HSPs)
chr1 (140-350)||(52633079-52633298)
chr1 (219-345)||(16272817-16272942)
chr1 (222-348)||(43375596-43375722)
chr1 (133-219)||(9002623-9002710)
chr1 (283-366)||(40416511-40416594)
chr1 (225-353)||(4590533-4590661)
chr1 (259-353)||(9002505-9002599)
chr1 (221-355)||(41560380-41560514)
chr1 (246-361)||(52532638-52532753)
chr1 (281-355)||(12930368-12930442)
chr1 (312-366)||(42501248-42501302)
chr1 (304-366)||(46226369-46226431)
chr1 (315-364)||(3818947-3818996)
chr1 (305-366)||(7762518-7762579)
chr1 (288-353)||(19936613-19936678)
chr1 (314-355)||(26299236-26299277)
chr1 (282-355)||(27520265-27520338)
chr1 (305-366)||(52561670-52561731)
chr1 (369-409)||(22090012-22090052)
[»] chr4 (17 HSPs)
chr4 (99-348)||(8917202-8917454)
chr4 (97-355)||(17665918-17666174)
chr4 (225-355)||(26037506-26037636)
chr4 (221-345)||(55007907-55008031)
chr4 (286-338)||(55772157-55772209)
chr4 (286-338)||(55836393-55836445)
chr4 (223-366)||(51421870-51422013)
chr4 (283-366)||(53518382-53518465)
chr4 (311-353)||(31459147-31459189)
chr4 (305-366)||(28351699-28351760)
chr4 (305-354)||(31043224-31043273)
chr4 (305-348)||(27049258-27049301)
chr4 (305-344)||(28486083-28486122)
chr4 (312-355)||(31403122-31403165)
chr4 (288-366)||(45204903-45204981)
chr4 (97-141)||(7034752-7034796)
chr4 (288-348)||(25574982-25575042)
[»] chr6 (7 HSPs)
chr6 (108-355)||(25493730-25493981)
chr6 (221-366)||(34502-34647)
chr6 (224-354)||(5095986-5096116)
chr6 (305-355)||(6055852-6055902)
chr6 (305-366)||(4797066-4797127)
chr6 (249-366)||(31818671-31818788)
chr6 (311-355)||(9593795-9593839)
[»] chr2 (15 HSPs)
chr2 (179-366)||(17581599-17581792)
chr2 (108-333)||(13592176-13592406)
chr2 (259-366)||(21834694-21834801)
chr2 (133-225)||(21835207-21835299)
chr2 (257-355)||(13149483-13149581)
chr2 (221-366)||(33287561-33287706)
chr2 (221-366)||(43573127-43573271)
chr2 (241-349)||(19336910-19337018)
chr2 (290-349)||(26670925-26670984)
chr2 (221-355)||(9496017-9496151)
chr2 (108-158)||(17581860-17581910)
chr2 (305-355)||(19024329-19024379)
chr2 (246-364)||(31254430-31254548)
chr2 (247-353)||(45077880-45077988)
chr2 (305-353)||(11412861-11412908)
[»] chr3 (26 HSPs)
chr3 (120-254)||(43111164-43111300)
chr3 (115-222)||(43412150-43412257)
chr3 (241-353)||(19758040-19758151)
chr3 (223-366)||(45486848-45486994)
chr3 (288-355)||(45289155-45289222)
chr3 (305-366)||(19676162-19676223)
chr3 (313-366)||(32052607-32052660)
chr3 (305-353)||(19737137-19737185)
chr3 (306-366)||(39600763-39600823)
chr3 (223-355)||(54128530-54128662)
chr3 (312-355)||(19162675-19162718)
chr3 (282-353)||(29601045-29601116)
chr3 (224-355)||(44133845-44133975)
chr3 (288-366)||(40116532-40116610)
chr3 (305-355)||(48657409-48657459)
chr3 (305-355)||(49042087-49042137)
chr3 (305-355)||(50960718-50960768)
chr3 (305-350)||(36304122-36304167)
chr3 (224-325)||(40106620-40106721)
chr3 (224-344)||(48712075-48712195)
chr3 (283-355)||(30294180-30294252)
chr3 (314-366)||(36820067-36820119)
chr3 (305-349)||(39235295-39235339)
chr3 (305-353)||(44571580-44571628)
chr3 (263-355)||(49841767-49841859)
chr3 (315-355)||(52678941-52678981)
[»] scaffold0018 (1 HSPs)
scaffold0018 (313-366)||(178509-178562)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 105 - 344
Target Start/End: Original strand, 28299843 - 28300079
Alignment:
Q  105 tacttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgag 204  Q
    ||||||||  |||| |||| |||||||||||| | ||| |||||||||||||||  ||||||||||||||||| ||||||||||||   |||||||||||    
T  28299843 tacttggacacgtgcgatgtacgagaagttgactgtcttattgactaataaatgttgtagttgatcatgaaatgaaataatagttg---ttgagcatgag 28299939  T
Q  205 ttaatactttcaaaagacaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatat 304  Q
    ||||| |||  |||| || |||||||| |||||||||||| ||  ||||| |||||||||||||||| ||||||| ||||||||||| |||||| |||      
T  28299940 ttaatgcttctaaaaaacgacaacaacaaccaaatattattcctttaagtgggatcgactacatggaccgaaatacgtcatattgttttatcataaatca 28300039  T
Q  305 tatttagatccaactcattaatctataaatctttcataat 344  Q
    | |||||||||||||||||||||||| || ||||| ||||    
T  28300040 tgtttagatccaactcattaatctattaaactttcctaat 28300079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 38668306 - 38668181
Alignment:
Q  173 gaaataaaataatagttgttgttgagcatgagttaatactttcaaaagacaacaacaaccaccaaatattataccactaagtcggatcgactacatggaa 272  Q
    |||| |||| ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |||||  |  ||||| || |||||||||||||     
T  38668306 gaaaaaaaaaaatagttgttgttgagcatgagttaattcttccaaaagacaataacaacaaccaaacattatctcgataagtggggtcgactacatggac 38668207  T
Q  273 cgaaatatgtcatattgttctatcat 298  Q
    ||||||| ||||||||||| ||||||    
T  38668206 cgaaatacgtcatattgttatatcat 38668181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 33827806 - 33827888
Alignment:
Q  273 cgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||| |||||||||||||||||| ||   ||||||||||||| |||||||||||||||| |||  ||||||||| |||||    
T  33827806 cgaaatacgtcatattgttctatcataaaccatatttagatccaattcattaatctataaatattttttaatagtttctctta 33827888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 35643605 - 35643748
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||  ||||| ||||||||| || | | ||||||||| | ||||||| ||   ||||||||||| ||   ||||| ||||||||||    
T  35643605 acaacaacaacaaccaagcattatcccactaagtggggtaggctacatggatcaaaatatggcag--tgttctatcataaaccatatttcgatccaactc 35643702  T
Q  321 attaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||| || ||||||| ||||| ||| |||||  |||||||||    
T  35643703 attaatctctagatctttcttaataatttctcttatagtttttcta 35643748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 366
Target Start/End: Complemental strand, 29520931 - 29520789
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatt 323  Q
    |||||||| |||||  ||||| ||||||| | || | | ||||||||| | || || | |||| ||||||||||| ||   ||||| |||||||||||||    
T  29520931 acaacaacaaccaagcattatcccactaaatggggtgggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcatt 29520832  T
Q  324 aatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| |||||| ||| ||| ||||| |||||  |||||||||    
T  29520831 aatctctaaatcgttcctaacagtttctcttatagtttttcta 29520789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 29717249 - 29717306
Alignment:
Q  294 atcattaatattatttagatccaactcattaatctataaatctttcataatagttttt 351  Q
    ||||| ||| |||||||||||||||||||||| || |||||||||| |||||| ||||    
T  29717249 atcataaattttatttagatccaactcattaacctttaaatctttcttaatagatttt 29717306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 490620 - 490492
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| | |||   |||| ||||||||| || ||| ||||||||| | || || | |||| ||||||||||| ||   ||||| ||||||||||    
T  490620 acaacaacaacaaacaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactc 490521  T
Q  321 attaatctataaatctttcataatagttt 349  Q
    || ||||| |||||||||| | |||||||    
T  490520 atcaatctctaaatctttccttatagttt 490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 41971847 - 41971919
Alignment:
Q  281 gtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    |||||| ||||||||||| || | |||||   |||||||||||||||| |||||||||| || ||||||||||    
T  41971847 gtcataatgttctatcataaacaatatttcagtccaactcattaatctctaaatctttcttagtagtttttct 41971919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 43904724 - 43904784
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataa 343  Q
    |||| ||||||||||| ||   |||||||||||||||||||||||| ||||||| ||||||    
T  43904724 cataatgttctatcataaaccatatttagatccaactcattaatctctaaatctctcataa 43904784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 17491713 - 17491796
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||| ||   ||||| | ||||||||||||||||  || |||||| ||||||||| |||||| |||||||||    
T  17491713 cataatgttctatcataaaccatattttggtccaactcattaatctccaagtctttcttaatagtttctcttacagtttttcta 17491796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 30559935 - 30559844
Alignment:
Q  264 tacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||||| | || || |||||| ||||||||||| ||   ||| | |||||||||||||||||| |||||||||| | ||||||| |||||    
T  30559935 tacatggatcaaattacgtcataatgttctatcataaaccatatatggatccaactcattaatctctaaatctttcctgatagtttctctta 30559844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 367
Target Start/End: Original strand, 35914601 - 35914744
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatt 323  Q
    |||||||| ||||| | ||||  |||||||| || ||  ||||||||| | || || | |||| ||||||||||| ||   ||||| | |||||||||||    
T  35914601 acaacaacaaccaagtcttatctcactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatattttggtccaactcatt 35914700  T
Q  324 aatctataaatctttcataatagtttttcttactgtttttctat 367  Q
    |||||  || |||||| ||||||||| |||||  ||||||||||    
T  35914701 aatcttcaagtctttcctaatagtttctcttatagtttttctat 35914744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 4011277 - 4011223
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||||||||| || ||||||| ||||||||| |||||  |||||||||    
T  4011277 atccaactcattaatctttagatctttcttaatagtttctcttatagtttttcta 4011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 13589680 - 13589619
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| ||| |||||||||||||| |||||||||  ||||||||| |||||  |||||||||    
T  13589680 tattttgattcaactcattaatctttaaatcttttctaatagtttctcttatagtttttcta 13589619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 21425306 - 21425213
Alignment:
Q  246 ccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttc 339  Q
    ||||||||| || ||  ||||||||| | || |||| |||| || |||||||| |||  ||||| |||||||||||||||||| || |||||||    
T  21425306 ccactaagtagggtctgctacatggatcaaattatgccataatggtctatcataaatcatatttcgatccaactcattaatctctatatctttc 21425213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 24558676 - 24558624
Alignment:
Q  313 tccaactcattaatctataaatctttcataatagtttttcttactgtttttct 365  Q
    |||| ||||||||||| |||||||||| ||||| ||| ||||| |||||||||    
T  24558676 tccagctcattaatctctaaatctttcttaataatttctcttattgtttttct 24558624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 42584584 - 42584512
Alignment:
Q  281 gtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    |||||| ||||||||||| ||   ||||| ||||||| ||||||| ||||| ||||||| | |||||||||||    
T  42584584 gtcataatgttctatcataaaccatatttggatccaaatcattaacctatagatctttccttatagtttttct 42584512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 99 - 354
Target Start/End: Original strand, 23086970 - 23087232
Alignment:
Q  99 aactagtacttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgag 198  Q
    ||||||||||| |||||||| |||| || |||||||||||    |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  23086970 aactagtacttcgatccgtgcgatgtacaagaagttgattgaaccattgattaataaatgtggtagttgatcatgaaatgaaataatagttgttgttgag 23087069  T
Q  199 catgagttaatactttcaaaagacaac------aacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttc 292  Q
    ||||||||||| ||| |||||||||||      |||||| ||||||||||||  ||| |||| || ||||||||||||| | ||||| ||||||||||||    
T  23087070 catgagttaatgcttccaaaagacaacaacaataacaacaaccaaatattatcgcacaaagtggggtcgactacatggaccaaaatacgtcatattgttc 23087169  T
Q  293 tatcat-taatattatttagatccaactcattaatctataaatctttcataatagtttttctt 354  Q
    ||||||  |||  | ||||| || |||||||||||| |||||||||||  |||||||| ||||    
T  23087170 tatcataaaatcatgtttagttctaactcattaatccataaatctttctgaatagtttctctt 23087232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 353
Target Start/End: Original strand, 36101774 - 36101906
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||   |||| ||||||||| || || |||||||||| | || || |||||| ||||||||||| ||   ||||| ||||||||||    
T  36101774 acaacaacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattacgtcataatgttctatcataaaccatattttgatccaactc 36101873  T
Q  321 attaatctataaatctttcataatagtttttct 353  Q
    ||||||||||||||||||||||||| |||||||    
T  36101874 attaatctataaatctttcataataatttttct 36101906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 353
Target Start/End: Original strand, 27893560 - 27893692
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||   ||||  |||||||| || ||| ||||||| | | || |||| |||| ||||||||||| ||   ||||| | |||| |||    
T  27893560 acaacaacaacaaccaagccttatcgcactaagtagggtcggctacatgaatcaaattatgccataatgttctatcataaaacatatttcggtccagctc 27893659  T
Q  321 attaatctataaatctttcataatagtttttct 353  Q
    |||||||| |||||||||| |||||||||||||    
T  27893660 attaatctctaaatctttcttaatagtttttct 27893692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 35922478 - 35922410
Alignment:
Q  281 gtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagttt 349  Q
    |||||| ||||||||||| |||  ||||||||| ||||||||||| || |||||||||| |||||||||    
T  35922478 gtcataatgttctatcataaatcatatttagattcaactcattaacctctaaatctttcttaatagttt 35922410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 37976458 - 37976375
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||| ||   ||||| |||||||||||||||||| ||||||||||||| ||||||  ||||  |||||||||    
T  37976458 cataatgttctatcataaaccatatttggatccaactcattaatctctaaatctttcatattagtttcacttatagtttttcta 37976375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 45601699 - 45601616
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||| |||  ||||| |||||||||||||||||| || ||||||| |||| |||| |||||  |||||||||    
T  45601699 catagtgttctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggtttctcttatagtttttcta 45601616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 28628021 - 28628075
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||  |||||||||    
T  28628021 atccaactcattaatctctaaatctttcctaatagtttctcttatagtttttcta 28628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 28542032 - 28542073
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  28542032 atccaactcattaatctctaaatctttcttaatagtttttct 28542073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 28562453 - 28562497
Alignment:
Q  311 gatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||    
T  28562453 gatccaactcgttaatctctaaatctttcataatagtttctctta 28562497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 36239855 - 36239938
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||| ||   ||||| |||||||||| ||||||| ||||| |||| ||||||||| |||||  |||||||||    
T  36239855 cataatgttctatcataaagcatatttggatccaactcgttaatctctaaatttttcctaatagtttctcttatagtttttcta 36239938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 40979928 - 40980059
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatt 323  Q
    |||||||| |||||   |||| ||||||||| || ||| ||||||||| | || || | |||| ||||||||||| ||   ||||| |||||||||||||    
T  40979928 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatatttggatccaactcatt 40980027  T
Q  324 aatctataaatctttcataatagtttttctta 355  Q
     | || |||||||||  ||||||||| |||||    
T  40980028 gacctctaaatcttttctaatagtttctctta 40980059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 1569234 - 1569156
Alignment:
Q  288 tgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||| ||   ||||| |||||||||||||||||| || ||||||| ||||||||  |||||  |||||||||    
T  1569234 tgttctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagttactcttatagtttttcta 1569156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 29653638 - 29653687
Alignment:
Q  316 aactcattaatctataaatctttcataatagtttttcttactgtttttct 365  Q
    ||||||||||||| || ||||||| ||||||||| |||||| ||||||||    
T  29653638 aactcattaatctctagatctttcttaatagtttctcttacagtttttct 29653687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 43282032 - 43281971
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| |||||||||||||||||| || ||||| | |||| |||| |||||| |||||||||    
T  43282032 tattttgatccaactcattaatctctagatcttacttaattgtttctcttacggtttttcta 43281971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 366
Target Start/End: Complemental strand, 3457589 - 3457501
Alignment:
Q  278 tatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| |||| |||| |||||| || | ||||| |||||||||||||||||| |  |||||||  | ||||||||||||  |||||||||    
T  3457589 tatgccataatgttttatcataaacaatattttgatccaactcattaatctttcgatctttctaattagtttttcttatagtttttcta 3457501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 4066965 - 4066925
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataata 345  Q
    ||||||||| |||||||||||||| ||||||||| ||||||    
T  4066965 tatttagattcaactcattaatctctaaatcttttataata 4066925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 5335880 - 5335840
Alignment:
Q  369 tagtcttaccacacattcaacacagcatccccatctctgct 409  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  5335880 tagtcttaccacacattcaacgcaacatcctcatctctgct 5335840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 28355366 - 28355322
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagttt 349  Q
    ||||| |||||| |||||||| ||||||||||||| |||||||||    
T  28355366 tattttgatccacctcattaacctataaatctttcctaatagttt 28355322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 44951440 - 44951352
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattattt 309  Q
    ||||||||||| ||||||  ||||||||||||||    ||| ||||||||| | || || |||||| ||||||||||| |||| |||||    
T  44951440 acaacaacaacaaccaaaccttataccactaagtattgtcggctacatggatcaaattacgtcatagtgttctatcataaataatattt 44951352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 115 - 366
Target Start/End: Complemental strand, 23980341 - 23980084
Alignment:
Q  115 cgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagttaatacttt 214  Q
    |||||||| |||||||||||| ||||||||||||||||||||||  |||  ||||| | |||| ||||||||||||||||||||||| || |||| |||     
T  23980341 cgtgtgatacacgagaagttggttatctcattgactaataaatgttgtaagtgatcctaaaatgaaataatagttgttgttgagcattaggtaatgcttc 23980242  T
Q  215 caaaagacaacaacaaccac------caaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatt 308  Q
    ||||||| ||| ||||| ||      |||||||||| ||||||||| || | || ||||||||  ||||||||||||||||||||||||| ||   ||||    
T  23980241 caaaagataacgacaacaacaaaaatcaaatattatcccactaagtggggttgattacatggattgaaatatgtcatattgttctatcataaaccatatt 23980142  T
Q  309 tagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||||||||||||||||||| |||  |||||||| ||||| |||| |||||    
T  23980141 tagatccaactcattaatctataaatcattctcaatagtttctcttattgttcttcta 23980084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 32759994 - 32759885
Alignment:
Q  100 actagtacttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagc 199  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||    
T  32759994 actagtacttggatccgtgtgatacacgagaagtttattatctccttgactaataaatgtggtagttaatcatgaaatgaaataatagttgatgttgagc 32759895  T
Q  200 atgagttaat 209  Q
    ||||||||||    
T  32759894 atgagttaat 32759885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 355
Target Start/End: Original strand, 33157747 - 33157962
Alignment:
Q  149 ctaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagttaatactttcaaaagac---------aacaacaaccaccaaat 239  Q
    |||||||||  | |||||||||||||||| |||||||||||||||| |||||| ||||||| |||  |||||||         ||||||||| || |||     
T  33157747 ctaataaatatgatagttgatcatgaaatgaaataatagttgttgtcgagcataagttaatgcttctaaaagacgacaaagacaacaacaacaacaaaaa 33157846  T
Q  240 attataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttc 339  Q
    |||||  ||| || |  |||||||||| |||| ||||||| || ||||| |||||| || |||| ||| | |||||||||||||||||||||||| |||     
T  33157847 attatctcacgaaataagatcgactacgtggatcgaaataagttatattattctattataaataatatgttgatccaactcattaatctataaatatttt 33157946  T
Q  340 ataatagtttttctta 355  Q
     || |||||| |||||    
T  33157947 ttagtagtttctctta 33157962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 41808180 - 41808100
Alignment:
Q  248 actaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatct 328  Q
    |||||||| ||||||||||||||| | ||  |||||||| |||||||||||  ||  |||||| |||||||||||||||||    
T  41808180 actaagtcagatcgactacatggatcaaacgatgtcataatgttctatcatacatcatatttatatccaactcattaatct 41808100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 9235311 - 9235198
Alignment:
Q  241 ttataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttca 340  Q
    |||| ||||||||| || ||| ||||||||| | || |||| |||| ||||||||||| ||   ||||| |||||| ||||||||||| || |||||||     
T  9235311 ttatcccactaagtggg-tcggctacatggatcaaattatgccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttct 9235213  T
Q  341 taatagtttttctta 355  Q
    ||||||||| |||||    
T  9235212 taatagtttctctta 9235198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 14725751 - 14725669
Alignment:
Q  273 cgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||| |||||| |||||||| ||||| ||   ||||| ||||||||||||||| || ||||||||| |||||||||| |||||    
T  14725751 cgaattatgtcgtattgttcgatcataaaccatattttgatccaactcattaacctttaaatcttttataatagtttatctta 14725669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 20076410 - 20076500
Alignment:
Q  107 cttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttga 197  Q
    |||| ||||||| |||| | | ||||||||||||| |||||| | ||||||  ||| |||||  ||||||| |||||||||||||||||||    
T  20076410 cttgaatccgtgcgatgtaggtgaagttgattatcccattgattgataaatatggtggttgaatatgaaatgaaataatagttgttgttga 20076500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 15489587 - 15489634
Alignment:
Q  319 tcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||||||||| |||||| ||||||||| ||||| ||||||||||    
T  15489587 tcattaatctataagtctttcttaatagtttctcttattgtttttcta 15489634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 28186863 - 28186906
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||    
T  28186863 atccaactcattaatctctaaatctttcttaatagtttctctta 28186906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 32759798 - 32759733
Alignment:
Q  284 atattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagttt 349  Q
    ||||| ||| ||||| |||  ||||| || ||||||||||| |||||||||||||| |||||||||    
T  32759798 atattattccatcataaatcatattttgaaccaactcattattctataaatctttcttaatagttt 32759733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 39322154 - 39322195
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||||||||||||||| || ||||||| |||||||||||||    
T  39322154 atccaactcattaatctttagatctttcttaatagtttttct 39322195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 36200930 - 36200882
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||| ||||||||||||||| || || |||||| ||||||||||||||    
T  36200930 tatttggatccaactcattaacctctatatcttttataatagtttttct 36200882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 350
Target Start/End: Original strand, 52633079 - 52633298
Alignment:
Q  140 tctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagttaatactttcaaaa---------gacaacaacaa 230  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||         |||||||||||    
T  52633079 tctcattgactaatatatgtggtagttgatcatgaaatgaaataatagttgttgttgagcatgagttaatgcttacaaaagacaacaacgacaacaacaa 52633178  T
Q  231 ccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctat 330  Q
    | |||||| |  || ||||||||   | | ||||||||||| | |||||||||||||||||||||||| ||   |||||| || ||| ||||||||||||    
T  52633179 caaccaaacaccatcccactaagcgaggttgactacatggaccaaaatatgtcatattgttctatcataaaccatatttatatacaattcattaatctat 52633278  T
Q  331 aaatctttcataatagtttt 350  Q
    ||||||||||||||||||||    
T  52633279 aaatctttcataatagtttt 52633298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 16272817 - 16272942
Alignment:
Q  219 agacaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaac 318  Q
    |||||||||||||  ||| | ||||| ||||||||| |||| || |||||||| | |||||||||||||||||||||||| ||   || |||||| | ||    
T  16272817 agacaacaacaacatccagacattatcccactaagt-ggattgattacatggatcaaaatatgtcatattgttctatcataaaccataattagatactac 16272915  T
Q  319 tcattaatctataaatctttcataata 345  Q
    |||||||||||||||| ||||||||||    
T  16272916 tcattaatctataaatatttcataata 16272942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 348
Target Start/End: Original strand, 43375596 - 43375722
Alignment:
Q  222 caacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactca 321  Q
    |||||||||| |||||   |||| ||||||||| |||| | ||||||||| | || ||||||||| ||||||||||| ||   ||||| | |||||||||    
T  43375596 caacaacaacaaccaatctttatcccactaagtgggattggctacatggatcaaattatgtcataatgttctatcatgaaccatatttcggtccaactca 43375695  T
Q  322 ttaatctataaatctttcataatagtt 348  Q
    ||||||| |||||||||| ||||||||    
T  43375696 ttaatctctaaatctttcttaatagtt 43375722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 9002710 - 9002623
Alignment:
Q  133 ttgattatctcattgactaataaatgaggtagtt-gatcatgaaataaaataatagttgttgttgagcatgagttaatactttcaaaa 219  Q
    |||||||||| ||||||||||||||| | ||||| ||| || |||| |||||||||||||||||||||||||  |||| |||||||||    
T  9002710 ttgattatcttattgactaataaatgtgatagtttgattataaaatgaaataatagttgttgttgagcatgatataatgctttcaaaa 9002623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 40416594 - 40416511
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||| ||   ||||| ||||||||||||||||||||| ||||||| ||||||||| |||||  |||||||||    
T  40416594 cataatgttctatcataaaccatatttcgatccaactcattaatctatagatctttcttaatagtttgtcttatagtttttcta 40416511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 4590533 - 4590661
Alignment:
Q  225 caacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatta 324  Q
    ||||||| ||||||  |||| ||||||||| || ||| ||||||||| | || ||   |||||||||||||||   ||  ||| |  ||||||||||| |    
T  4590533 caacaacaaccaaaccttatcccactaagtggggtcggctacatggatcaaattacaccatattgttctatcacatatcatatatctatccaactcatca 4590632  T
Q  325 atctataaatctttcataatagtttttct 353  Q
    ||||||||||||||| |||||||||||||    
T  4590633 atctataaatctttcttaatagtttttct 4590661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 9002599 - 9002505
Alignment:
Q  259 tcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||||||||||  || ||||||||||| ||||||||| | ||   ||||||||| ||| | ||||||||||||||||||   ||||||||||||    
T  9002599 tcgactacatggcccggaatatgtcataatgttctatcttaaactatatttagattcaatttattaatctataaatcttttcaaatagtttttct 9002505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 41560514 - 41560380
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||   |||| ||||||||| || ||| ||||||||| | || || | |||| ||||||||||| |    ||||| ||||||||||    
T  41560514 acaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataacccatatttggatccaactc 41560415  T
Q  321 attaatctataaatctttcataatagtttttctta 355  Q
    |||||||| ||||| | || ||||||||| |||||    
T  41560414 attaatctctaaatgtatcctaatagtttctctta 41560380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 361
Target Start/End: Original strand, 52532638 - 52532753
Alignment:
Q  246 ccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataata 345  Q
    ||||||||| || ||| ||||||| | | || || | |||| ||||||||||| ||   ||||| | |||||||||||||| | |||||||||| |||||    
T  52532638 ccactaagtggggtcggctacatgaatcaaattacgccataatgttctatcataaaccatattttgttccaactcattaatttctaaatctttcctaata 52532737  T
Q  346 gtttttcttactgttt 361  Q
    |||| ||||| |||||    
T  52532738 gtttctcttattgttt 52532753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 12930368 - 12930442
Alignment:
Q  281 gtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||| | ||||||||| |||  ||||| ||||||||||| |||||| ||||| |||||||||| ||| |||||    
T  12930368 gtcataatcttctatcataaatcatatttggatccaactcactaatctttaaatttttcataataatttctctta 12930442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 42501302 - 42501248
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||||||||||||||| ||||||| ||||| ||| |||||  |||||||||    
T  42501302 atccaactcattaatctatagatctttcttaataatttctcttatagtttttcta 42501248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 46226369 - 46226431
Alignment:
Q  304 ttatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||| || ||||||||||| |||||||| ||||||||||||||  ||||  |||||||||    
T  46226369 ttatttaaatgcaactcattaacctataaatatttcataatagtttcacttatggtttttcta 46226431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 3818947 - 3818996
Alignment:
Q  315 caactcattaatctataaatctttcataatagtttttcttactgtttttc 364  Q
    |||||||||||||| |||||||||| ||||||||| |||||  |||||||    
T  3818947 caactcattaatctctaaatctttcttaatagtttctcttatagtttttc 3818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 7762518 - 7762579
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||||||||||||||||  | |||||||||  ||||||||| |||||  |||||||||    
T  7762518 tatttagatccaactcattaacatctaaatcttttctaatagtttctcttatagtttttcta 7762579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 19936678 - 19936613
Alignment:
Q  288 tgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||||||||||||   ||||| |||| ||||||||||  | |||||||||| |||||||||||||    
T  19936678 tgttctatcattaaccatatttggatctaactcattaacatctaaatctttcctaatagtttttct 19936613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 26299277 - 26299236
Alignment:
Q  314 ccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||||||||| || |||||||||||||||||||| |||||    
T  26299277 ccaactcattaacctctaaatctttcataatagtttctctta 26299236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 27520265 - 27520338
Alignment:
Q  282 tcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||| ||||||||||| |||  ||||| |||||| ||||||||||| ||||| |||  ||||||||| |||||    
T  27520265 tcataatgttctatcataaatcatatttggatccagctcattaatctctaaattttttctaatagtttctctta 27520338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 52561670 - 52561731
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| ||||||||||||||| || |||||||||| ||| ||||| |||||  |||||||||    
T  52561670 tatttggatccaactcattaacctctaaatctttcctaacagtttctcttatagtttttcta 52561731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 22090052 - 22090012
Alignment:
Q  369 tagtcttaccacacattcaacacagcatccccatctctgct 409  Q
    |||||||||||| ||| ||||||||||||| ||||||||||    
T  22090052 tagtcttaccactcatccaacacagcatcctcatctctgct 22090012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 348
Target Start/End: Original strand, 8917202 - 8917454
Alignment:
Q  99 aactagtacttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgag 198  Q
    |||||||||||| ||||||| |||| ||  |||||||||||||| ||||| | ||||||| ||| |||||| ||||||| ||||||||||||||||||||    
T  8917202 aactagtacttgaatccgtgcgatgtacatgaagttgattatcttattgagtgataaatgtggtggttgattatgaaatgaaataatagttgttgttgag 8917301  T
Q  199 catgagttaatactttcaaaa---gacaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctat 295  Q
    ||||||||||| ||| |||||   |||| ||||||| | |||| | ||| | | ||||| || ||||||||||||  |||||||| ||||||| ||||||    
T  8917302 catgagttaatgcttccaaaagatgacagcaacaacaatcaaacaatatcctattaagtggggtcgactacatgggccgaaatatatcatattattctat 8917401  T
Q  296 cattaatattatttagatccaactcattaatctataaatctttcataatagtt 348  Q
    ||| ||   |||||||||  ||||| ||||| |||||||||||  ||||||||    
T  8917402 cataaaccatatttagatttaactcgttaatttataaatcttttctaatagtt 8917454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 17665918 - 17666174
Alignment:
Q  97 ctaactagtacttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttg 196  Q
    |||||||||||||||||  ||| ||||||   ||||||||||||||||||||||| ||||||  |||| | ||||  |||  |||||||| ||||||||     
T  17665918 ctaactagtacttggatttgtgcgatgcaatcgaagttgattatctcattgactactaaatgtcgtaggttatcactaaaagaaataataattgttgttc 17666017  T
Q  197 agcatgagttaatactttcaaaagacaacaacaac-----caccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgtt 291  Q
    ||||||||||| | |||  || || | ||||||||      |||||| ||||| ||||||||| || ||||||||||||| ||||||| |||||||||||    
T  17666018 agcatgagttattgcttcaaataggcgacaacaacacaataaccaaacattatcccactaagtggggtcgactacatggatcgaaatacgtcatattgtt 17666117  T
Q  292 ctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||       |||||  ||| |||||||||||||||||||||||  ||||||||| |||||    
T  17666118 ctatca-------tattttcatctaactcattaatctataaatcttttctaatagtttctctta 17666174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 355
Target Start/End: Original strand, 26037506 - 26037636
Alignment:
Q  225 caacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatta 324  Q
    ||||||| ||||||  |||| ||||||||| || ||| ||||||||| | || || | |||| ||||||||||| ||   ||||| |||||||||||||     
T  26037506 caacaacaaccaaaccttatcccactaagtggggtcggctacatggatccaattacgccatagtgttctatcataaaccatatttggatccaactcattc 26037605  T
Q  325 atctataaatctttcataatagtttttctta 355  Q
    | || |||||||||| ||||||||| |||||    
T  26037606 acctctaaatctttcctaatagtttctctta 26037636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 345
Target Start/End: Complemental strand, 55008031 - 55007907
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||   |||| ||||||||| || ||| ||||||||| | || || |||||| || |||||||| ||   ||||| | ||||||||    
T  55008031 acaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgtcataatgatctatcataaaccatatttcggtccaactc 55007932  T
Q  321 attaatctataaatctttcataata 345  Q
    |||||||| |||||||||| |||||    
T  55007931 attaatctctaaatctttcttaata 55007907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 55772209 - 55772157
Alignment:
Q  286 attgttctatcattaatattatttagatccaactcattaatctataaatcttt 338  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  55772209 attgatctatcataaattttatttggatccaactcattaatctataaatcttt 55772157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 55836445 - 55836393
Alignment:
Q  286 attgttctatcattaatattatttagatccaactcattaatctataaatcttt 338  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  55836445 attgatctatcataaattttatttggatccaactcattaatctataaatcttt 55836393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 51422013 - 51421870
Alignment:
Q  223 aacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcat 322  Q
    ||||||||| |||||   |||| |||||||||  ||| | ||||||||| | || || |||||| ||||||||||| ||   | ||| ||||||| ||||    
T  51422013 aacaacaacaaccaagctttatcccactaagtgagattggctacatggatcaaattacgtcataatgttctatcataaaccatttttggatccaattcat 51421914  T
Q  323 taatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||| || |||||||||| ||||||||| |||||  |||||||||    
T  51421913 taacctctaaatctttcctaatagtttctcttatagtttttcta 51421870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 53518382 - 53518465
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||| ||   ||||||||||||||||||||| || |||||||||| || |||||||||| |  |||||||||    
T  53518382 catagtgttctatcataaaccatatttagatccaactcattaacctctaaatctttcctattagtttttctcatagtttttcta 53518465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 31459189 - 31459147
Alignment:
Q  311 gatccaactcattaatctataaatctttcataatagtttttct 353  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  31459189 gatccaactcattaatctctaaatctttcctaatagtttttct 31459147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 28351760 - 28351699
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| ||||||||||| |||||| |||||||||| ||||||||| |||||  |||||||||    
T  28351760 tatttggatccaactcaataatctctaaatctttcgtaatagtttctcttatagtttttcta 28351699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 31043273 - 31043224
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttctt 354  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||| ||||    
T  31043273 tatttggatccaactcattaatctctaaatctttcctaatagtttctctt 31043224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 27049258 - 27049301
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtt 348  Q
    ||||| || |||||||||||||||||||||||||| ||||||||    
T  27049258 tatttggaaccaactcattaatctataaatctttcttaatagtt 27049301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 28486122 - 28486083
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataat 344  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  28486122 tatttggatccaactcattaatctctaaatctttcataat 28486083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 31403122 - 31403165
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||||| |||||||| || |||||||||||||||||||||||    
T  31403122 atccaactaattaatctctagatctttcataatagtttttctta 31403165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 45204903 - 45204981
Alignment:
Q  288 tgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||| ||   ||||| ||||||||| ||||| || |||||||||| ||||||||| |||||  |||||||||    
T  45204903 tgttctatcataaaccatatttggatccaacttattaaactctaaatctttcctaatagtttctcttatagtttttcta 45204981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7034752 - 7034796
Alignment:
Q  97 ctaactagtacttggatccgtgtgatgcacgagaagttgattatc 141  Q
    |||||||||||||||| ||||| |||||||| |||||| ||||||    
T  7034752 ctaactagtacttggacccgtgcgatgcacgggaagttcattatc 7034796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 25575042 - 25574982
Alignment:
Q  288 tgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtt 348  Q
    ||||||||||| ||   ||||| |||||||||||||||||| || ||||||| ||||||||    
T  25575042 tgttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 108 - 355
Target Start/End: Original strand, 25493730 - 25493981
Alignment:
Q  108 ttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagtta 207  Q
    ||||| ||||| |||||||| ||||||||||||||||||||| |||||||  ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25493730 ttggacccgtgcgatgcacgggaagttgattatctcattgacaaataaatatggtagttgatcatgaaat-gaataatagttgttgttgagcatgagtta 25493828  T
Q  208 atactttcaaaa------gacaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaa 301  Q
    |||||| |||||      |||||||||||| |||||| |||||  || ||||| || | |||||||  ||  ||| || ||||||||||| |||| | ||    
T  25493829 atacttccaaaagatgacgacaacaacaacaaccaaacattatctcattaagt-ggtttgactacacagattgaagtaagtcatattgttttatcgtaaa 25493927  T
Q  302 tattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
       |||||| || |||||||||||||||||||  |||| | ||||||| |||||    
T  25493928 ccatatttaaattcaactcattaatctataaacttttcctgatagtttctctta 25493981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 34502 - 34647
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| ||||| | |||| ||||||||| || ||  ||||||||| | || || | |||| ||||||||||| ||   |||||  |||||||||    
T  34502 acaacaacaacaaccaagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaactc 34601  T
Q  321 attaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||| || ||||||| |||| |||| |||||  |||||||||    
T  34602 attaatctttagatctttcttaatggtttctcttatagtttttcta 34647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 354
Target Start/End: Complemental strand, 5096116 - 5095986
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatt 323  Q
    |||||||| ||||||  |||| ||||||||| |||||| |||||| || | || || | |||| ||||||||||| ||   ||||| |||||||||||||    
T  5096116 acaacaacaaccaaaccttatcccactaagtgggatcggctacatagatcaaattacgccataatgttctatcataaaccatattttgatccaactcatt 5096017  T
Q  324 aatctataaatctttcataatagtttttctt 354  Q
    || |  |||||||||| ||| ||||| ||||    
T  5096016 aaccactaaatctttcctaagagtttctctt 5095986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 6055852 - 6055902
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||| |||| |||||||||| || |||||||||||||||||||| |||||    
T  6055852 tatttggatctaactcattaacctctaaatctttcataatagtttctctta 6055902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 4797127 - 4797066
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| ||| |||||| ||||| | |||||||||||||||||||| |||||  |||||||||    
T  4797127 tatttcgattcaactcgttaatttctaaatctttcataatagtttatcttatcgtttttcta 4797066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 366
Target Start/End: Complemental strand, 31818788 - 31818671
Alignment:
Q  249 ctaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtt 348  Q
    |||||| || ||| ||||||||| | || || | |||| ||||||||||| ||   || || ||||||||||||||||||  ||| ||||| ||||||||    
T  31818788 ctaagtggggtcggctacatggatcaaattacgacataatgttctatcataaaccatactttgatccaactcattaatctccaaacctttcctaatagtt 31818689  T
Q  349 tttcttactgtttttcta 366  Q
    | |||||  |||||||||    
T  31818688 tctcttatagtttttcta 31818671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 9593795 - 9593839
Alignment:
Q  311 gatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||||||||||||||| ||| |||||| ||||||||| |||||    
T  9593795 gatccaactcattaatctctaagtctttcctaatagtttctctta 9593839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 17581792 - 17581599
Alignment:
Q  179 aaataatagttgttgttgagcatgagttaatactttcaaaagac------aacaacaaccaccaaatattataccactaagtcggatcgactacatggaa 272  Q
    ||||||||||||||||||||| ||||||||| |||  |||||||      ||||||||||||||||  |||| | ||||||| ||||||||||||| ||     
T  17581792 aaataatagttgttgttgagcttgagttaatgcttctaaaagacgacgacaacaacaaccaccaaactttatcctactaagtgggatcgactacatagac 17581693  T
Q  273 cgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||||||||||||||||||||| |||  ||||||||| |||||||| ||| | |||||||||| ||||||| | |||||  |||||||||    
T  17581692 cgaaatatgtcatattgttctatcataaatcatatttagattcaactcataaatatgtaaatctttcgtaatagtctctcttatagtttttcta 17581599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 108 - 333
Target Start/End: Original strand, 13592176 - 13592406
Alignment:
Q  108 ttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagtta 207  Q
    ||||| ||||| |||||||| |||||||||||||| |||||| |||||||| ||||| ||||||||||||   |||||||||||||||||||||||||||    
T  13592176 ttggacccgtgcgatgcacgggaagttgattatcttattgacaaataaatgtggtagatgatcatgaaat-ggataatagttgttgttgagcatgagtta 13592274  T
Q  208 atactttcaaaa------gacaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaa 301  Q
    || ||| |||||      || ||||||||| | |||| ||||| ||| ||||| || | ||||||| |||  ||| || |||||||||||||||||| ||    
T  13592275 atgcttccaaaagatgacgataacaacaacaatcaaacattatcccattaagtgggtttgactacacggattgaagtaagtcatattgttctatcataaa 13592374  T
Q  302 tattatttagatccaactcattaatctataaa 333  Q
       |||||| || |||||  ||||||||||||    
T  13592375 ccatatttaaattcaacttcttaatctataaa 13592406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 21834801 - 21834694
Alignment:
Q  259 tcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactg 358  Q
    ||||||||||||| | |||||||||||||||||||||||| ||    ||||||||||||||||||||||||||||| |||| ||||||||| |||||  |    
T  21834801 tcgactacatggaccaaaatatgtcatattgttctatcataaaccaaatttagatccaactcattaatctataaatatttcctaatagtttatcttatag 21834702  T
Q  359 tttttcta 366  Q
    ||||||||    
T  21834701 tttttcta 21834694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 21835299 - 21835207
Alignment:
Q  133 ttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagttaatactttcaaaagacaac 225  Q
    |||||||||| |||||  |||||||| || ||||||| |||| || ||||||||||||||||| |||||||||||||  ||||||||||||||    
T  21835299 ttgattatcttattgaaaaataaatgtggcagttgattatgatatgaaataatagttgttgttcagcatgagttaatcttttcaaaagacaac 21835207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 13149581 - 13149483
Alignment:
Q  257 gatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||| ||| ||||| | || ||||||||| ||||||||||| ||   ||||| ||| | ||||||||| || |||||||||||||||||||| |||||    
T  13149581 gatcggctatatggatcaaattatgtcataatgttctatcatcaacgatatttggattctactcattaacctctaaatctttcataatagtttctctta 13149483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 366
Target Start/End: Complemental strand, 33287706 - 33287561
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| ||||| | || | ||||||||| |  | | ||||| ||| | || ||||||||| ||||||||||| ||   ||||| |||| |||||    
T  33287706 acaacaacaacaaccaagtcttgtcccactaagtggagttggctacaaggatcaaactatgtcataatgttctatcataaaccatatttcgatctaactc 33287607  T
Q  321 attaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||| | || ||||||| ||||||||| |||||  |||||||||    
T  33287606 attaatttctagatctttcttaatagtttctcttatagtttttcta 33287561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 43573127 - 43573271
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||   |||| ||||||||| || ||| ||||||||| | || || | ||||  |||| ||||| |||  ||||| ||||||||||    
T  43573127 acaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataacgttcgatcataaatcatatttggatccaactc 43573226  T
Q  321 attaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| || |||||||||| || | ||||||||||  |||||||||    
T  43573227 attaacct-taaatctttcctagttgtttttcttatagtttttcta 43573271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 19336910 - 19337018
Alignment:
Q  241 ttataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttca 340  Q
    |||| ||| ||||| |||| | ||||||||| | || || | |||| ||||||||||| ||   ||||| |||||||||||||||||| ||||||||||     
T  19336910 ttatcccaataagtgggattggctacatggatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttct 19337009  T
Q  341 taatagttt 349  Q
    | |||||||    
T  19337010 ttatagttt 19337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 26670984 - 26670925
Alignment:
Q  290 ttctatcattaatattatttagatccaactcattaatctataaatctttcataatagttt 349  Q
    ||||||||| |||  ||||| | |||||||||||||||| |||||||||| |||||||||    
T  26670984 ttctatcataaatcatattttggtccaactcattaatctctaaatctttcttaatagttt 26670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 9496151 - 9496017
Alignment:
Q  221 acaacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc 320  Q
    ||||||||||| |||||   || | ||||||||| || | | ||||||||| | || || | |||| ||||||||||| ||   ||||| ||||||||||    
T  9496151 acaacaacaacaaccaagccttgtcccactaagtggggttggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactc 9496052  T
Q  321 attaatctataaatctttcataatagtttttctta 355  Q
    ||||| || ||||||||||  |||||||| |||||    
T  9496051 attaacctctaaatctttctgaatagtttctctta 9496017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 17581910 - 17581860
Alignment:
Q  108 ttggatccgtgtgatgcacgagaagttgattatctcattgactaataaatg 158  Q
    ||||| || ||||||  ||| ||||||||||||||||||||||||||||||    
T  17581910 ttggacccatgtgatttacgggaagttgattatctcattgactaataaatg 17581860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 19024379 - 19024329
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||||| ||||||||||||||||| || ||||||| ||||||||| |||||    
T  19024379 tatttatatccaactcattaatctttagatctttcttaatagtttctctta 19024329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 364
Target Start/End: Complemental strand, 31254548 - 31254430
Alignment:
Q  246 ccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataata 345  Q
    ||||||||| || ||||||||||| | | || | || |||| |||||| |||| |||  |||||  || |||||||||||||| || ||||||| |||||    
T  31254548 ccactaagttgggtcgactacatgtaccaaactgtgccataatgttctgtcataaatcatatttctattcaactcattaatctctagatctttcttaata 31254449  T
Q  346 gtttttcttactgtttttc 364  Q
    ||||  ||||| |||||||    
T  31254448 gtttaacttacagtttttc 31254430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 45077988 - 45077880
Alignment:
Q  247 cactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactc--attaatctataaatctttcataat 344  Q
    |||||||| || |||  |||||||| | || |||| |||  ||||||||||| ||   ||||| ||||||||||  |||||||| |||||||||| ||||    
T  45077988 cactaagtggggtcggttacatggatcaaattatgccattatgttctatcataaactatatttcgatccaactctcattaatctctaaatctttcttaat 45077889  T
Q  345 agtttttct 353  Q
    |||||||||    
T  45077888 agtttttct 45077880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 11412908 - 11412861
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||| |||||||||||||||||| | |||||||| |||||||||||||    
T  11412908 tatttggatccaactcattaatctct-aatctttcctaatagtttttct 11412861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 43111164 - 43111300
Alignment:
Q  120 gatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagttaatactttcaaaa 219  Q
    |||||||||||||||||| ||||| |||||||||||||  ||| |||||||||||||| ||||||||||||||||||| || |  ||||| ||| |||||    
T  43111164 gatgcacgagaagttgat-atctcgttgactaataaatatggtggttgatcatgaaatgaaataatagttgttgttgaacacgcattaatgcttccaaaa 43111262  T
Q  220 ---gacaacaacaaccaccaaatattataccactaagt 254  Q
       ||||||||||||  ||||| ||||| |||||||||    
T  43111263 aacgacaacaacaacacccaaacattatcccactaagt 43111300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 43412257 - 43412150
Alignment:
Q  115 cgtgtgatgcacgagaagttgattatctcattgactaataaatgaggtagttgatcatgaaataaaataatagttgttgttgagcatgagttaatacttt 214  Q
    |||| ||||||| ||||||||||||| | ||||||||||| ||    |||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  43412257 cgtgcgatgcacaagaagttgattattttattgactaatatatataatagttgattatgaaatgaaatagtagttgttgttgagcatgagttaatgcttt 43412158  T
Q  215 caaaagac 222  Q
    ||||||||    
T  43412157 caaaagac 43412150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 19758151 - 19758040
Alignment:
Q  241 ttataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttca 340  Q
    |||| ||||||||| || ||| ||||||||| | || |||  |||| ||||||||||| ||   |||| ||||||||||||||||||| ||||| ||||     
T  19758151 ttatcccactaagtggggtcg-ctacatggatcaaattataccataatgttctatcataaaccatattgagatccaactcattaatctctaaatatttcc 19758053  T
Q  341 taatagtttttct 353  Q
    |||||||||||||    
T  19758052 taatagtttttct 19758040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 45486848 - 45486994
Alignment:
Q  223 aacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaa---tattatttagatccaact 319  Q
    ||||||||| |||||   |||| ||||||||| ||  || ||||||||| | || |||| |||| ||||||||||| ||   |||||||| | ||||| |    
T  45486848 aacaacaacaaccaagctttatcccactaagtggggccggctacatggatcaaattatgccataatgttctatcataaaccatattatttggttccaagt 45486947  T
Q  320 cattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||||  || |||||||||||||||| |||||  |||||||||    
T  45486948 cattaatctcaaagtctttcataatagtttctcttatagtttttcta 45486994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 45289155 - 45289222
Alignment:
Q  288 tgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||||||| ||   ||||| |||||||||||||||||| |||||||||| ||||||||| |||||    
T  45289155 tgttctatcataaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctctta 45289222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 19676162 - 19676223
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||| ||||||||||||||| || ||||| |||| ||||||||| |||||| |||||||||    
T  19676162 tatttggatccaactcattaacctctaaatttttcctaatagtttctcttacagtttttcta 19676223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 32052607 - 32052660
Alignment:
Q  313 tccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |  |||||||||    
T  32052607 tccaactcattaatctataaatctttcctaatagtttatctcatagtttttcta 32052660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 19737185 - 19737137
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    |||| ||||||||||||||||||| ||||| |||| |||||||||||||    
T  19737185 tattgagatccaactcattaatctctaaatatttcctaatagtttttct 19737137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 39600763 - 39600823
Alignment:
Q  306 atttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||| ||||||||||||||| || |||||||||| ||||||||| |||||  |||||||||    
T  39600763 atttggatccaactcattaacctctaaatctttcttaatagtttctcttatagtttttcta 39600823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 54128662 - 54128530
Alignment:
Q  223 aacaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcat 322  Q
    ||||||||| |||||   |||| ||||||||| || ||| ||||||||| | || |||| |||| ||||||||||| ||   ||||| | ||||||||||    
T  54128662 aacaacaacaaccaagccttatcccactaagtggggtcgcctacatggatcaaattatgccataatgttctatcataaaccatatttgggtccaactcat 54128563  T
Q  323 taatctataaatctttcataatagtttttctta 355  Q
    | | || |||||||||| | ||||||| |||||    
T  54128562 tgacctctaaatctttccttatagtttctctta 54128530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 19162675 - 19162718
Alignment:
Q  312 atccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||    
T  19162675 atccaactcattaatctctaaatctttcctaatagtttctctta 19162718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 29601116 - 29601045
Alignment:
Q  282 tcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||| ||||||||||| ||   |||||  ||||||||||||||||| |||||||||| |||||| ||||||    
T  29601116 tcataatgttctatcataaactatatttgaatccaactcattaatctctaaatctttcttaatagcttttct 29601045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 44133845 - 44133975
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatt 323  Q
    |||||||| ||||||  |||||||||||| |  ||||||||||||||| | ||||| | |||| || |||||||| ||   ||||| |||| | ||||||    
T  44133845 acaacaacaaccaaactttataccactaaataagatcgactacatggatc-aaatacgccataatgctctatcatgaactgtatttcgatctatctcatt 44133943  T
Q  324 aatctataaatctttcataatagtttttctta 355  Q
    ||||| || |||| || ||||||||| |||||    
T  44133944 aatctttagatctatcttaatagtttctctta 44133975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 40116532 - 40116610
Alignment:
Q  288 tgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||| ||   ||||| | |||||||||||||||| ||||||| || ||||||||| |||||  |||||||||    
T  40116532 tgttctatcataaaccatatttcggtccaactcattaatctctaaatctatcctaatagtttctcttatagtttttcta 40116610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 48657409 - 48657459
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||| ||| ||||||||||||||||| || |||| |||||||||||||||    
T  48657409 tatttcgatacaactcattaatctatagatttttcttaatagtttttctta 48657459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 49042137 - 49042087
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||| ||||||||||||||| || |||||||||| ||||||||| |||||    
T  49042137 tatttggatccaactcattaacctctaaatctttcctaatagtttctctta 49042087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 50960718 - 50960768
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||| |||||||||||||||||| |||| ||||| ||||||||| |||||    
T  50960718 tatttggatccaactcattaatctctaaacctttcctaatagtttctctta 50960768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 36304167 - 36304122
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttt 350  Q
    ||||| |||||||||||||||||| || ||||||| ||||||||||    
T  36304167 tattttgatccaactcattaatctctagatctttcttaatagtttt 36304122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 40106620 - 40106721
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcatt 323  Q
    |||||||| |||||   |||| ||||||||| || || ||||||| || | || ||||||||| ||||||||||| ||   ||||| |||||||||||||    
T  40106620 acaacaacaaccaagccttatcccactaagtggggtccactacattgatcaaattatgtcataatgttctatcataaaccatatttggatccaactcatt 40106719  T
Q  324 aa 325  Q
    ||    
T  40106720 aa 40106721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 48712075 - 48712195
Alignment:
Q  224 acaacaaccaccaaatattataccactaagtcggatcgactacatggaacgaaata-tgtcatattgttctatcattaatattatttagatccaactcat 322  Q
    |||||||| |||||  ||||| ||||||||| ||||| ||||||||||  |||||| ||||||| |||| |||||| ||   |||||  |||||||||||    
T  48712075 acaacaacaaccaagcattatcccactaagtgggatcaactacatggat-gaaataatgtcataatgttatatcataaaccatatttgaatccaactcat 48712173  T
Q  323 taatctataaatctttcataat 344  Q
     ||| | |||||||||| ||||    
T  48712174 caatatctaaatctttcctaat 48712195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 30294180 - 30294252
Alignment:
Q  283 catattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    |||| |||| |||||| |||  || |||||||||||||||| | ||||||||||||  ||||||||| |||||    
T  30294180 catagtgttttatcataaatcatacttagatccaactcattgacctataaatcttttttaatagtttatctta 30294252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 36820067 - 36820119
Alignment:
Q  314 ccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    ||||||||||||||| || ||||||| ||||||||| |||||  |||||||||    
T  36820067 ccaactcattaatctctagatctttcttaatagtttctcttatagtttttcta 36820119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 39235339 - 39235295
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagttt 349  Q
    |||||||||||||||||||||  | |||||||||| |||||||||    
T  39235339 tatttagatccaactcattaacttctaaatctttcctaatagttt 39235295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 44571628 - 44571580
Alignment:
Q  305 tatttagatccaactcattaatctataaatctttcataatagtttttct 353  Q
    ||||| |||||||||||||||||| ||||| |||| | |||||||||||    
T  44571628 tatttggatccaactcattaatctctaaatatttccttatagtttttct 44571580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 49841859 - 49841767
Alignment:
Q  263 ctacatggaacgaaatatgtcatattgttctatcattaatattatttagatccaactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||||| | || |||| |||| |||||||||||  |   ||||| |||||||||||||||||| || ||||||  ||||||||| |||||    
T  49841859 ctacatggatcaaattatgccataatgttctatcatataccatatttcgatccaactcattaatctttagatctttgttaatagtttctctta 49841767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 52678941 - 52678981
Alignment:
Q  315 caactcattaatctataaatctttcataatagtttttctta 355  Q
    ||||||||||| || |||||||||||||||||||| |||||    
T  52678941 caactcattaacctctaaatctttcataatagtttctctta 52678981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 178509 - 178562
Alignment:
Q  313 tccaactcattaatctataaatctttcataatagtttttcttactgtttttcta 366  Q
    |||||||||||||||| || ||||||| ||||||||| |||||  |||||||||    
T  178509 tccaactcattaatctctatatctttcttaatagtttctcttatagtttttcta 178562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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