View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_19 (Length: 414)
Name: NF11375_low_19
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 295253 - 295053
Alignment:
| Q |
19 |
agaaggtagagggagacatacaaattactattttgtttagtgcggtatcttgtcattcatggggccaccatcttttgttaaaaacatgtcttacatataa |
118 |
Q |
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| T |
295253 |
agaagttagagggagacatacaaattactattttgtttagtgcggtatcttgtcattcatggggccaccatcttttgttaaaaacatgtcttacatataa |
295154 |
T |
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| Q |
119 |
attggcgaacacaacagtcttcttctttttctttcaccaccgacccttttatttagctgttaattc-aacactacatgtgttgtgtattgtaattttgtt |
217 |
Q |
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| T |
295153 |
attggcgaacacaacggtcttcttctttttctttcaccaccgacccttttatttagctgttaattcaaacactacatgtgttgtgtattgtaattttgtt |
295054 |
T |
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| Q |
218 |
c |
218 |
Q |
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| T |
295053 |
c |
295053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 213 - 402
Target Start/End: Complemental strand, 294985 - 294793
Alignment:
| Q |
213 |
ttgttcatttcactttcatacaa---tatgtatgtcgtctaacaccaattgattgattattattacgtactgtacggtaccctcaatgttttagttttag |
309 |
Q |
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| T |
294985 |
ttgttcatttcactttcatacaacaatatgtatgtcgtctaacaccaattgattgattattattacgtactgtactgtaccctgaatgttttagttttag |
294886 |
T |
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| Q |
310 |
ttaagctttcttattccttagacagacactgtcattgcctcgttgacactaatgttttatcatttttctcttcattattgcgtcttcattctt |
402 |
Q |
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| T |
294885 |
ttaagctttcttattccttagacagacactgtcattgcctcgttgacactaatgttttatcatttttctcttcattattgcatattcattctt |
294793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 14442717 - 14442767
Alignment:
| Q |
301 |
tagttttagttaagctttcttattccttagacagacactgtcattgcctcg |
351 |
Q |
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| T |
14442717 |
tagttttagttaagctttcttattccttagacagacagtgtcattgcctcg |
14442767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 18576325 - 18576375
Alignment:
| Q |
301 |
tagttttagttaagctttcttattccttagacagacactgtcattgcctcg |
351 |
Q |
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| T |
18576325 |
tagttttagttaagctttcttattccttagacagacagtgtcattgcctcg |
18576375 |
T |
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