View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_21 (Length: 402)
Name: NF11375_low_21
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 131 - 387
Target Start/End: Complemental strand, 1411920 - 1411664
Alignment:
| Q |
131 |
ctaattaggctttgtttctcaataaaagctatgttttcattgtctttgtatatgtgatgtgtcaagtcatgcatgtttgatgtcaatttcctttaaacca |
230 |
Q |
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| T |
1411920 |
ctaattaggctttgtttctcaataaaagctatgttttcattgtctttgtatatgtgatgtgtcaagtcatgcatgtttgatgtcaatttcctttaaacca |
1411821 |
T |
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| Q |
231 |
acaataaggacaacacattgctaatggaaaaccatattcaacatttaccaaacagatccaatattacaatcaaaatgttattaatgttttcctcttatag |
330 |
Q |
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| T |
1411820 |
acaataaggacaacacattgctaatggaaaaccatattcaacatttaccaaacagatccaatattacaatcaaaatgttattaatgttttcctcttatag |
1411721 |
T |
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| Q |
331 |
atagcttaaagggtatgttcgctccaaactcatagtaaaatgcaggtccaaaagaag |
387 |
Q |
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| T |
1411720 |
atagcttaaagggtatgttcgctccaaactcatagtaaaatgcaggtccaaaagaag |
1411664 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 29187971 - 29187942
Alignment:
| Q |
20 |
atagtgcatcaccaacacctaatttattta |
49 |
Q |
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| T |
29187971 |
atagtgcatcaccaacacctaatttattta |
29187942 |
T |
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