View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_22 (Length: 388)
Name: NF11375_low_22
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 37838774 - 37838657
Alignment:
| Q |
12 |
tgagatgaatgaccggagtgtgaggtggtttcttttcttcattctcttttgagcttcttgcaaactaatatcaaagaa-aaaatcacatattatttgtca |
110 |
Q |
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| T |
37838774 |
tgagatgaatgaccggagtgtgaggtggtttcttttcttcattctcttttgagcttcttgcaaactaatatcaaagaaaaaaatcacatattatttgtca |
37838675 |
T |
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| Q |
111 |
tcaactggtaagtctaat |
128 |
Q |
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| T |
37838674 |
tcaactggtaagtctaat |
37838657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 232 - 367
Target Start/End: Complemental strand, 37826959 - 37826827
Alignment:
| Q |
232 |
gattcataattgtagaaaacaggcagtttacattttcccaaccactcaagaaaccaagttacagcttatgccacaatatatgaaagacatatacctgcaa |
331 |
Q |
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| T |
37826959 |
gattcaaaatggttgacaacagacagtttacattttcccaaccaatcaagaaaccaagtaacagctgatgccacaatata--aaag-catatacctgcag |
37826863 |
T |
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| Q |
332 |
tatttgccacagaaagacctatcctcggcattcaac |
367 |
Q |
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| T |
37826862 |
cacttgtcacagaaaaatttgtcctcagcattcaac |
37826827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 37827440 - 37827365
Alignment:
| Q |
12 |
tgagatgaatgaccggagtgtgaggtggtttcttt-tcttcattctcttttgagcttcttgcaaactaatatcaaa |
86 |
Q |
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| T |
37827440 |
tgagatgaataaccagaatgtgaggaggtttctttatcttcattctcttctgagcttcttgcaaactaataccaaa |
37827365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 39514204 - 39514165
Alignment:
| Q |
47 |
tcttcattctcttttgagcttcttgcaaactaatatcaaa |
86 |
Q |
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| T |
39514204 |
tcttcatcctcttctgagcttcttgcaaactaatatcaaa |
39514165 |
T |
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