View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_24 (Length: 379)
Name: NF11375_low_24
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 100 - 368
Target Start/End: Complemental strand, 29025259 - 29024995
Alignment:
| Q |
100 |
aactatctattcgatttcgagacacatactatacaccgatattcctaggaataggatgtactcttgtatacttgtacgtacaagaatttaaattaannnn |
199 |
Q |
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| T |
29025259 |
aactatctattcgatttcgagacacatactatacaccgatattcctaggaataggatgtactcttgtatacttgtacgtacaagaacttaaatt----tt |
29025164 |
T |
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| Q |
200 |
nnnnnnnnatttcaaaaatactttaagaaaatacaatattgtacgacaatggcataaacccgatgagatacatatgagatgatatcggatctctagactt |
299 |
Q |
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| T |
29025163 |
ttttttttatttcaaaaatactttaagaaaatacaatattgtacgacaatagcataaatcggatgagatacatatgagatgatatcgggtctctagactt |
29025064 |
T |
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| Q |
300 |
ctaacatatataaagtaaaaaagaaagaaagtcgtttcattaatcttctcaattgctcacatgtccttt |
368 |
Q |
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| T |
29025063 |
ctaacatttataaagtaaaaaagaaagaaagtcgtttcattaatcttctcaattgctcacatgtccttt |
29024995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 29025534 - 29025447
Alignment:
| Q |
18 |
aggttgcaccaaatgaattccaagctatatgaatagggacattaggtatgatttataaagccagagtacactaaaatgagtaaactat |
105 |
Q |
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| T |
29025534 |
aggttgcaccaaatgaattccaagctatatgaatagggatattaggtatgatttataaagccagagtacactaaaatgagtaaactat |
29025447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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