View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_26 (Length: 374)
Name: NF11375_low_26
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 2892039 - 2891693
Alignment:
| Q |
18 |
accaagttccactttcacattttgtccaatttcaagaccaacttccacaagtaaattccaatgttagtactaccacattcactaccccttgtgtttcttc |
117 |
Q |
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| T |
2892039 |
accaagttccactttcacattttctccaatttcaagaccaacttccacaagtaaattccaatgttattactaccacattcactaccccttgtgtttcttc |
2891940 |
T |
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| Q |
118 |
attgccaaatgtggatacatatacatcaaatttcaccgaccttagtaattaccaacaatattctgttcatgatattgattgccaccaaaataatgggttt |
217 |
Q |
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| T |
2891939 |
attgccaaatgtggatacatatacatcaaatttcaccgaccttagtaattaccaacaatattctgttcatgatattgattgccaccaaaataatgggttt |
2891840 |
T |
|
| Q |
218 |
ggtctaagtaccttaaaagaggaggattatatccctcaattatcaaactataataattattatggttctgataatcaaaatcttatttactatcaaactt |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2891839 |
ggtctaagtaacttaaaagaggaggattatatccctcaattatcaaactataataattattatggttctgataatcaaaatcttatgtactatcaaactt |
2891740 |
T |
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| Q |
318 |
caaatcaacttctatcaacaccatcatcttctagtcccacacctttg |
364 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2891739 |
caaatcaacttctatcaacaccgtcatcttctagtcccacacctttg |
2891693 |
T |
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