View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11375_low_27 (Length: 372)
Name: NF11375_low_27
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 37057823 - 37058166
Alignment:
| Q |
10 |
gcagagattaaagatggtttggaaggatccaatcctctgaaaaaatggatcttaacctggtcagaaacaacaatattcaacaaaacttttagatacttaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37057823 |
gcagagattaaagatggtttggaaggatccaatcctctgaaaaaatggatcttaacctggtcagaaacaacaatattcaacaaaacttttagatacttaa |
37057922 |
T |
|
| Q |
110 |
aaagtattcatctaatcacaattgtggatatattttttaaaatctcatgtggatgggaccattctattagcatgtgatgaacctttagatataagtaaaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37057923 |
agagtattcatctaatcacaattgtggatatattttttaaaatctcatgtggatgggaccattctattagcatgtgatgaacctttagatataagtaaaa |
37058022 |
T |
|
| Q |
210 |
caaactcttaaacttgagggctgaataaagtttggaagttgaaataacattgcaacaacatctttgatcaaatattacaatccttgtgttaatttttaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058023 |
caaactcttaaacttgagggctgaataaagtttggaagttgaaataacattgcaacaacatctttgatcaaatattacaatccttgtgttaatttttaag |
37058122 |
T |
|
| Q |
310 |
tgaagaaaaaagggaaaacttcactagaaaaggaacgagggccc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058123 |
tgaagaaaaaagggaaaacttcactagaaaaggaacgagggccc |
37058166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University