View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_28 (Length: 372)
Name: NF11375_low_28
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 46618969 - 46618605
Alignment:
| Q |
1 |
aagtaattagttgttagattaatttttactcaccacttacactaaaatagatccaatagaatatatgtatatggttaagttgtctatttgtagagcaaca |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46618969 |
aagtaattagttgttagattaatttttactcgtcacttacactaaaatagatccaatagaatatatgtatatggtgaagttgtctatttgtagagcaaca |
46618870 |
T |
|
| Q |
101 |
tgcaaaacttgatgagaagaaacagttcttaacaaaaagatacattctttaatgctatgtttcaaatcaaagtgtatattaatgcgtcaatcaacccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46618869 |
tgcaaaacttgatgagaagaaacagttcttaacaaaaagatacattctttaatgctatgtttcaaatcaaagtgtatattaatgcgtgaatcaacccatt |
46618770 |
T |
|
| Q |
201 |
caatcataaaaatagcacgttctattaatcacacctttatagtcttctctttaatgtaatca-tttagaaatctcaccacataaactttccactttttta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
46618769 |
caatcataaaaatagcacgttctattaatcacacctttatagtcttctctttaatgtaatcattttagaaatctcaccacat-aactttccactttttta |
46618671 |
T |
|
| Q |
300 |
tcacagcattgtgttcatgatgtgattattaatcacgctgcaattgtttttcctattcctttgcta |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46618670 |
tcacagcattgtgttcatgatgtgattattaatcacgctgcaattgtttttcctattcctttgcta |
46618605 |
T |
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