View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11375_low_3 (Length: 639)
Name: NF11375_low_3
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 26018824 - 26019217
Alignment:
| Q |
8 |
gagcagagatggaggcatacaacaaggttatgattgtgggcatattgttgatcattgccaataccatgttgttggttaatggtcagtcgttatgtcacat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26018824 |
gagcagagatggaggcatacaacaaggttatgattgtgggcatattgttgatcattgccaataccatgttgttggttaatggtcagtcgttatgtcacat |
26018923 |
T |
|
| Q |
108 |
gacaaaacaaggactgaaggcatgcgcgccgtatgttagtggcgacaattcagttaatggtcaaaagccatctgatgtttgctgctcggctattgccaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26018924 |
gacaaaacaaggactgaaggcatgcgcgccgtatgttagtggtgacaattcagttaatggtcaaaagccatctgatgtttgctgctcggctattgccaaa |
26019023 |
T |
|
| Q |
208 |
gccgatcttcaatgcctatgtcgttataaggattcaggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgtaagc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019024 |
gccgatcttcaatgcctatgtcgttataaggattcaggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgtaagc |
26019123 |
T |
|
| Q |
308 |
ttatggacaacttccattgctagtcatgtgtatcgggacgaatgcatatgcaagggctactaaactaataatgtaatccatggtttcactcttg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26019124 |
ttatggacaacttccattgctagtcatgtgtatcgggacgaatgcatatgcaagggctactaaactaataatgtaatccatggtttcgctcttg |
26019217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 429 - 622
Target Start/End: Original strand, 26019244 - 26019437
Alignment:
| Q |
429 |
gtaagcaaatgttaattgttagtatgttgtgttactagctgaactttgaaccctggatctcttagttcttagtctcagttcaaccacttaagctaagtct |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26019244 |
gtaagcaaatgttaattgttagtatgttgtgttactagctgaactttgaaccctggatctcttcgttcttagtctcagttcaaccacttaagctacgtct |
26019343 |
T |
|
| Q |
529 |
tgaagacgttgtttatgnnnnnnnatttattccgctgtgtttgttgctaatgctcatttatgtcatgtttcactctttcttgcactaaaagttt |
622 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019344 |
tgaagacgttgtttatgtttttttatttattccgttgtgtttgttgctaatgctaatttatgtcatgtttcactctttcttgcactaaaagttt |
26019437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 26002968 - 26003271
Alignment:
| Q |
12 |
agagatggaggcatacaacaaggttatgattgtgggcatattgttgatcattgccaataccatgttgttggttaatggtcagtcgttatgtcacatgaca |
111 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||| |
|
|
| T |
26002968 |
agagatggaggcatacaagaagattatgattgtggggatattgttgatcattgccaataccatgttgttgattgatggtcagtcattatgtcagatgaca |
26003067 |
T |
|
| Q |
112 |
aaacaaggactgaaggcatgcgcgccgtatgttagtggcgacaattcagttaatggtcaaaagccatctgatgtttgctgctcggctattgccaaagccg |
211 |
Q |
| |
|
|| |||||||||||||||| | ||| ||||| ||||| | ||| | | | ||||| ||| ||||| ||||||| |||| |||||| || | |
|
|
| T |
26003068 |
aacaaaggactgaaggcatgtgagccatatgtgagtggtgtcaaaattgctgcttttcaaattccaagtgatgcttgctgccatgctactgccaaggctg |
26003167 |
T |
|
| Q |
212 |
atcttcaatgcctatgtcgttataaggattcaggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgtaagcttat |
311 |
Q |
| |
|
||||| |||| || ||| |||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||| || || ||||| ||||||||| | |
|
|
| T |
26003168 |
atcttgaatgtctttgtagttacaaggattcagggttgctttctttctatggtattgatccagatcaagccatggatctcccagttaagtgtaagcttgt |
26003267 |
T |
|
| Q |
312 |
ggac |
315 |
Q |
| |
|
|||| |
|
|
| T |
26003268 |
ggac |
26003271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University