View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_30 (Length: 367)
Name: NF11375_low_30
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 52472529 - 52472188
Alignment:
| Q |
11 |
caaaggaaaaagtgttggatttgggccctaggaagcccaatataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctactactacta |
110 |
Q |
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| T |
52472529 |
caaaggaaaaagtgttggatttgggccctaggaagcccaatataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctacta------ |
52472436 |
T |
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| Q |
111 |
gacattgatctattagaagaaagaaggagatgatcatagagtcacaaccaatggaaaacgctaaaaaa--cggtgattctgtttggtgaggtagaggtaa |
208 |
Q |
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| T |
52472435 |
gacattgatctattagaagaaagaaggagatgatcatagagtcacaaccaatggaaaacgctaaaaaaaacggtgattctgtttggtgaggtagaggtaa |
52472336 |
T |
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| Q |
209 |
acattgaagcctttgt---ataatacttaagtggaattgacattatttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaa |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472335 |
acattgaagcctttgtgtaataatacttaagtggaattgacattatttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaa |
52472236 |
T |
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| Q |
306 |
tatgttgagaagctctcagcataaaggaaaatagagacatatcaaaac |
353 |
Q |
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| T |
52472235 |
tatgttgagaagctctaagcataaaggaaaatagagacatatcaaaac |
52472188 |
T |
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