View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11375_low_33 (Length: 352)
Name: NF11375_low_33
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_33 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 201 - 332
Target Start/End: Original strand, 22715654 - 22715785
Alignment:
| Q |
201 |
gaggagaatttgagcttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggtga |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22715654 |
gaggagaatttgaacttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggcga |
22715753 |
T |
|
| Q |
301 |
gagatgaggcaacatatataaagaagttttga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22715754 |
gagatgaggcaacatatataaagaagttttga |
22715785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 22989571 - 22989440
Alignment:
| Q |
201 |
gaggagaatttgagcttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggtga |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22989571 |
gaggagaatttgaacttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggcga |
22989472 |
T |
|
| Q |
301 |
gagatgaggcaacatatataaagaagttttga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22989471 |
gagatgaggcaacatatataaagaagttttga |
22989440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 46954970 - 46954836
Alignment:
| Q |
198 |
aaagaggagaatttgagcttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaaggg |
297 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46954970 |
aaagagaagaatttgagcttaccttgagctatccatcacaactgctatttggaactttgcttaatttccttttattgcgtgcttgagagaatgaaaaggg |
46954871 |
T |
|
| Q |
298 |
tgagagatgaggcaacatatataaagaagttttga |
332 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
46954870 |
tgacaaatgaggcaacatatataaataagttttga |
46954836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 28949914 - 28950035
Alignment:
| Q |
201 |
gaggagaatttgagcttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggtga |
300 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28949914 |
gaggataattcgaacttaccttgagctatccaacactgcttctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggcga |
28950013 |
T |
|
| Q |
301 |
gagatgaggcaacatatataaa |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28950014 |
gagatgaggcaacatatataaa |
28950035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 201 - 332
Target Start/End: Original strand, 201540 - 201671
Alignment:
| Q |
201 |
gaggagaatttgagcttaccttgagctatccaacactgctgctatttggaactttgcttaatttccttttcttgcgtgcttgagagaatgaaaagggtga |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
201540 |
gaggagaatttgaacttaccttgagctatccaacattgctgctatttggaactttgcttaatttccttttcttgcgtgtttgagagaatgaaaagggcga |
201639 |
T |
|
| Q |
301 |
gagatgaggcaacatatataaagaagttttga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
201640 |
gagatgaggcaacatatataaagaagttttga |
201671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 20090229 - 20090166
Alignment:
| Q |
132 |
tatacagagagaggaagaaacaaaacagtcatcattacaattatagtgataataggaactccca |
195 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20090229 |
tatatagagagaggaagaaacaaaacagtcatcattacaattatagtgataataggaactccca |
20090166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 20090323 - 20090286
Alignment:
| Q |
11 |
cacagagcttgtaatgctatatgtgttgtttcaaaaaa |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20090323 |
cacagagcttgtaatgctatatgtgttgtttcataaaa |
20090286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 20063654 - 20063588
Alignment:
| Q |
132 |
tatacagagagaggaagaaacaaaacagtcatcattacaattatagtgataataggaactcccataa |
198 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
20063654 |
tatacagatagagggggaaataaaacagtcatcattacaacttcggtgataataggaactctcataa |
20063588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 20300679 - 20300737
Alignment:
| Q |
134 |
tacagagagaggaagaaacaaaacagtcatcattacaattatagtgataataggaactc |
192 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
20300679 |
tacagatagagggagaaacaaaacaatcatcattacaatagaagtgatagtaggaactc |
20300737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University