View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_38 (Length: 314)

Name: NF11375_low_38
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_38
NF11375_low_38
[»] chr7 (7 HSPs)
chr7 (19-211)||(48669600-48669795)
chr7 (254-309)||(14305100-14305155)
chr7 (248-303)||(47719697-47719752)
chr7 (247-303)||(48669803-48669859)
chr7 (254-309)||(13785580-13785635)
chr7 (254-292)||(24389620-24389658)
chr7 (254-294)||(3688394-3688434)
[»] chr2 (8 HSPs)
chr2 (248-301)||(36238724-36238777)
chr2 (248-308)||(29513134-29513194)
chr2 (254-309)||(16692960-16693015)
chr2 (254-286)||(20432377-20432409)
chr2 (254-309)||(15902868-15902923)
chr2 (248-303)||(40252027-40252082)
chr2 (248-302)||(11750262-11750316)
chr2 (254-286)||(36237642-36237674)
[»] chr5 (9 HSPs)
chr5 (248-309)||(2313951-2314012)
chr5 (248-303)||(1281840-1281895)
chr5 (254-303)||(1283492-1283541)
chr5 (254-300)||(19128780-19128826)
chr5 (254-292)||(29087935-29087973)
chr5 (248-292)||(235596-235640)
chr5 (254-294)||(7632105-7632145)
chr5 (255-303)||(9407261-9407309)
chr5 (248-292)||(22212982-22213026)
[»] chr4 (9 HSPs)
chr4 (254-303)||(55976177-55976226)
chr4 (248-303)||(24551916-24551971)
chr4 (248-303)||(55000692-55000747)
chr4 (256-303)||(55976948-55976995)
chr4 (254-309)||(19550297-19550352)
chr4 (248-302)||(20774174-20774228)
chr4 (254-291)||(9365821-9365858)
chr4 (248-300)||(24158816-24158868)
chr4 (248-292)||(30573713-30573757)
[»] chr3 (12 HSPs)
chr3 (254-303)||(17603179-17603228)
chr3 (255-303)||(17603954-17604002)
chr3 (254-309)||(21727516-21727571)
chr3 (248-301)||(46149634-46149687)
chr3 (248-303)||(11654022-11654077)
chr3 (84-123)||(46786689-46786728)
chr3 (254-300)||(48648214-48648260)
chr3 (254-302)||(265092-265140)
chr3 (254-286)||(40872818-40872850)
chr3 (248-300)||(48649169-48649221)
chr3 (248-300)||(48765066-48765118)
chr3 (254-286)||(52282422-52282454)
[»] chr8 (4 HSPs)
chr8 (254-309)||(32414510-32414565)
chr8 (247-303)||(28929849-28929905)
chr8 (254-300)||(38628261-38628307)
chr8 (248-300)||(31641516-31641568)
[»] chr1 (9 HSPs)
chr1 (248-303)||(24991974-24992029)
chr1 (248-309)||(47967866-47967927)
chr1 (255-303)||(24992737-24992785)
chr1 (248-292)||(25468514-25468558)
chr1 (254-302)||(30663368-30663416)
chr1 (84-123)||(34454164-34454203)
chr1 (254-300)||(25469082-25469128)
chr1 (254-295)||(28182073-28182114)
chr1 (254-286)||(45818031-45818063)
[»] scaffold2007 (1 HSPs)
scaffold2007 (248-302)||(755-809)
[»] chr6 (2 HSPs)
chr6 (248-302)||(8488473-8488527)
chr6 (254-294)||(19311828-19311868)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 48669600 - 48669795
Alignment:
Q  19 tcactttcttcactctatactcc-atttgcttttcgatttccaacacaaataaaacaaatatttccaa-ttgtaggttcgccttaggccaccaaaatctc 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||     
T  48669600 tcactttcttcactctatactcccatttgcttttcgatttccaacacaaataaaacaaatattttcaaattgtaggttcgccttaggccaccaaaatctt 48669699  T
Q  117 ataaacgtca-tgcgtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagatccattattttagtccatccttataaaatctat 211  Q
    ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  48669700 ataaacggccctgcgtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagttccattcttttagtccatcattattaaatctat 48669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 14305100 - 14305155
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||    
T  14305100 ttgacactaggtgtcaacggattcattgacaccaaatcttaaacgttcatttctct 14305155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 47719752 - 47719697
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  47719752 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 47719697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 48669803 - 48669859
Alignment:
Q  247 agatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    ||||| ||||||||||||| |||||| |||||||  |||| ||||||||||||||||    
T  48669803 agatccattgacaccaggtgtcaacgaattcattaccaccaaatcttaaacgttcat 48669859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 13785635 - 13785580
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||| || |||||    
T  13785635 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttaatttctct 13785580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 24389658 - 24389620
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatct 292  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  24389658 ttgacaccaggtgtcaacggattcattgacaccaaatct 24389620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 3688394 - 3688434
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatctta 294  Q
    |||||||||| ||||||||||||| |||||||| |||||||    
T  3688394 ttgacaccagatatcaacggattcgttgacaccaaatctta 3688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 36238777 - 36238724
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttc 301  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36238777 gatccattgacaccaggtatcaacggattcattgacaccaaatcttaaacgttc 36238724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 29513194 - 29513134
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctc 308  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||| ||||||||| ||||    
T  29513194 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttgaacgttcatttctc 29513134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 16693015 - 16692960
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||||| |||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcatttctct 16692960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 20432409 - 20432377
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacc 286  Q
    |||||||||||||||||||||||||||||||||    
T  20432409 ttgacaccaggtatcaacggattcattgacacc 20432377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 15902923 - 15902868
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||||||||||| ||||||||||| |||||||  |||||||| ||||||| |||||    
T  15902923 ttgacaccaggtgtcaacggattcgttgacacaaaatcttaagcgttcatttctct 15902868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 40252027 - 40252082
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||| ||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  40252027 gatccattaacaccaggtgtcaacggattcgttgacaccaaatcctaaacgttcat 40252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 11750262 - 11750316
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 302  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  11750262 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 11750316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 36237642 - 36237674
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacc 286  Q
    |||||||||||| ||||||||||||||||||||    
T  36237642 ttgacaccaggtgtcaacggattcattgacacc 36237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 2313951 - 2314012
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||    
T  2313951 gatccattgacaccaggtgtcaacagattcattgacaccaaatcttaaacgttcatttctct 2314012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 1281840 - 1281895
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1281840 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 1281895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 1283541 - 1283492
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1283541 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 1283492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 19128780 - 19128826
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  19128780 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 19128826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 29087935 - 29087973
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatct 292  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  29087935 ttgacaccaggtgtcaacggattcattgacaccaaatct 29087973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 235596 - 235640
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatct 292  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  235596 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 235640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 7632105 - 7632145
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatctta 294  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  7632105 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 7632145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 9407261 - 9407309
Alignment:
Q  255 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||||||| || ||||||||||| |||||||| |||||||| |||||||    
T  9407261 tgacaccaagtgtcaacggattcgttgacaccaaatcttaagcgttcat 9407309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 22213026 - 22212982
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatct 292  Q
    ||||| ||||| |||||| |||||||||||||||||||| |||||    
T  22213026 gatcagttgacgccaggtgtcaacggattcattgacaccaaatct 22212982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 55976177 - 55976226
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  55976177 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 55976226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 24551971 - 24551916
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  24551971 gatccattgacaccaggtgtcaacggatttgttgacaccaaatcttaaacgttcat 24551916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 55000692 - 55000747
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||||||||||    
T  55000692 gatccattgacaccagatgtcaacggattcgttgacaccaaatcttaaacgttcat 55000747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 55976995 - 55976948
Alignment:
Q  256 gacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  55976995 gacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 55976948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 19550297 - 19550352
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||||||||||| ||||||||||| |||||||| ||| |||| ||||||| |||||    
T  19550297 ttgacaccaggtgtcaacggattcgttgacaccaaattttaagcgttcatttctct 19550352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 20774228 - 20774174
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 302  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  20774228 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 20774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 9365858 - 9365821
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatc 291  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  9365858 ttgacaccaggtgtcaacggattcattgacaccaaatc 9365821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 24158868 - 24158816
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||| ||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  24158868 gatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgtt 24158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 30573757 - 30573713
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatct 292  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  30573757 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 30573713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 17603179 - 17603228
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  17603179 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 17603228  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 17604002 - 17603954
Alignment:
Q  255 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  17604002 tgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 17603954  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 21727571 - 21727516
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||||| |||||    
T  21727571 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcatttctct 21727516  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 46149634 - 46149687
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttc 301  Q
    |||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||    
T  46149634 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaacgttc 46149687  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 11654077 - 11654022
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  11654077 gatccattgacaccagatctcaacggattcgttgacaccaaatcttaaatgttcat 11654022  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 46786728 - 46786689
Alignment:
Q  84 aattgtaggttcgccttaggccaccaaaatctcataaacg 123  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  46786728 aattgtaggttcgccctaggccaccaaaatctcagaaacg 46786689  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 48648214 - 48648260
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  48648214 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 48648260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 265140 - 265092
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 302  Q
    |||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  265140 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaagcgttca 265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 40872850 - 40872818
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacc 286  Q
    |||||||||||| ||||||||||||||||||||    
T  40872850 ttgacaccaggtgtcaacggattcattgacacc 40872818  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 48649221 - 48649169
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||| ||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  48649221 gatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgtt 48649169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 48765118 - 48765066
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||| ||||||||||||| |||| |||||| |||||||| |||||||| ||||    
T  48765118 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtt 48765066  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 52282454 - 52282422
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacc 286  Q
    |||||||||||| ||||||||||||||||||||    
T  52282454 ttgacaccaggtgtcaacggattcattgacacc 52282422  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 32414565 - 32414510
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||||| |||||    
T  32414565 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcatttctct 32414510  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 28929849 - 28929905
Alignment:
Q  247 agatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    ||||| ||||||||||| | ||||||||||| |||||||| |||||||||| |||||    
T  28929849 agatccattgacaccagatgtcaacggattcgttgacaccaaatcttaaactttcat 28929905  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 38628261 - 38628307
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||    
T  38628261 ttgacaccaggtatcaacggattcgttgacacaaaatcttaaccgtt 38628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 31641516 - 31641568
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||| ||||||||||||| |||| |||||| |||||||| |||||||| ||||    
T  31641516 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtt 31641568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 24991974 - 24992029
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  24991974 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcataaacgttcat 24992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 47967866 - 47967927
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcatctctct 309  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||| | ||||||| |||||    
T  47967866 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttgagcgttcatttctct 47967927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 24992785 - 24992737
Alignment:
Q  255 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 303  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  24992785 tgacaccaggtgtcaacggattcgttgacatcaaatcttaaacgttcat 24992737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 25468514 - 25468558
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatct 292  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||    
T  25468514 gatccattgacaccaggtgtcaacggattcattgacaccaaatct 25468558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 30663368 - 30663416
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 302  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  30663368 ttgacaccaggtatcaacggattcgttgacaccaaatctcaaccgttca 30663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 34454164 - 34454203
Alignment:
Q  84 aattgtaggttcgccttaggccaccaaaatctcataaacg 123  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  34454164 aattgtaggttcgccctaggccaccaaaatctcagaaacg 34454203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 25469128 - 25469082
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 300  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  25469128 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 25469082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 28182114 - 28182073
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatcttaa 295  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  28182114 ttgacaccaggtgtcaacggattctttgacaccaaatcttaa 28182073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 45818031 - 45818063
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacc 286  Q
    |||||||||||| ||||||||||||||||||||    
T  45818031 ttgacaccaggtgtcaacggattcattgacacc 45818063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 755 - 809
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 302  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  755 gatccattgacaccaggtttcaacggattcgttgacaccaaatctcaagcgttca 809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 8488473 - 8488527
Alignment:
Q  248 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 302  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  8488473 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 8488527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 19311868 - 19311828
Alignment:
Q  254 ttgacaccaggtatcaacggattcattgacacctaatctta 294  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  19311868 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 19311828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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