View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_39 (Length: 307)
Name: NF11375_low_39
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 22797822 - 22797547
Alignment:
| Q |
13 |
gagaagaaaatacaaaatatgacagtcatgtggaacaaaaaaggatctttaatgtcatgattttcatcaatattcgatacaatatgtcgtttaaaacaat |
112 |
Q |
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| T |
22797822 |
gagaagaaaatacaaaatatgacagtcatgtggaacaaaaaacgatctttgatgtcatgattttcatcaatattcgatacaatatgtcgtttaaaacaat |
22797723 |
T |
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| Q |
113 |
ggtcaattcttaaaaatcaagcgtattaaccttttagtccctgaaattgtaagggttgatcaatatagtccctcatatttatgaaacaaaaatctaatcc |
212 |
Q |
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| T |
22797722 |
ggtcaattcgtaaaaatcaagcgtattaaccttttagtccctgaaattgtaagggttgatcaatatagtccctcatatttatgaaacaaaaatctaatcc |
22797623 |
T |
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| Q |
213 |
gttaaattgaattatgtcagccatttagttaacatcctgattttaaaggttcgatgctcgtattgatgcagtaaga |
288 |
Q |
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| T |
22797622 |
gttaaattgaattatgtcagccatttagttaacatcctgattttaaaggtttgatgctcgtattgatgcagtaaga |
22797547 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 11567575 - 11567624
Alignment:
| Q |
144 |
ttttagtccctgaaattgtaagggttgatcaatatagtccctcatattta |
193 |
Q |
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| T |
11567575 |
ttttagtccttgaaattgtaagggtcggtcaatttagtccctcaaattta |
11567624 |
T |
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