View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_4 (Length: 588)

Name: NF11375_low_4
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_4
NF11375_low_4
[»] chr8 (1 HSPs)
chr8 (1-573)||(6473037-6473609)
[»] chr6 (7 HSPs)
chr6 (11-482)||(13608136-13608601)
chr6 (277-350)||(33361317-33361390)
chr6 (287-350)||(33412747-33412810)
chr6 (277-344)||(12782319-12782386)
chr6 (287-350)||(12785768-12785831)
chr6 (287-350)||(33060384-33060447)
chr6 (287-350)||(33390902-33390965)
[»] chr4 (8 HSPs)
chr4 (12-403)||(31244188-31244579)
chr4 (287-350)||(31496144-31496207)
chr4 (246-350)||(31160061-31160165)
chr4 (283-354)||(31482036-31482107)
chr4 (287-350)||(31501314-31501377)
chr4 (277-350)||(31020690-31020763)
chr4 (277-350)||(31030571-31030644)
chr4 (297-350)||(31476204-31476257)
[»] chr5 (2 HSPs)
chr5 (18-93)||(17599768-17599843)
chr5 (369-421)||(17599893-17599945)
[»] chr7 (2 HSPs)
chr7 (18-93)||(14724007-14724082)
chr7 (369-421)||(14723905-14723957)
[»] chr2 (1 HSPs)
chr2 (287-350)||(17437877-17437940)


Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 6473037 - 6473609
Alignment:
Q  1 ccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtccttgtacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473037 ccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtccttgtacat 6473136  T
Q  101 ggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagcgtagttttttgagaaaattacaatcaagatatgagattcttttatagc 200  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6473137 ggatgcaatcagcaatatttaccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatcaagatatgagattcttttatagc 6473236  T
Q  201 ttgtagaagctcagatgatatatttcccccttttctgacgtttatatcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatca 300  Q
    |||||| |||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473237 ttgtaggagctcagatgatatgtttccccctttttttaggtttatatcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatca 6473336  T
Q  301 gtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatttcctcctatttgaagagacactttggatgctactacgagtca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473337 gtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatttcctcctatttgaagagacactttggatgctactacgagtca 6473436  T
Q  401 ttgaaattgttaaagccaaaggcccaaaactaacttgctaaggattttgtattttgtttgcactgttgcttgctatgaaactaacatgctaactttacat 500  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473437 ttcaaattgttaaagccaaaggcccaaaactaacttgctaaggattttgtattttgtttgcactgttgcttgctatgaaactaacatgctaactttacat 6473536  T
Q  501 tgcaatgaattatattgcagcttaaatagttattggagtattcgtacatttgagccttttccagggtctttct 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473537 tgcaatgaattatattgcagcttaaatagttattggagtattcgtacatttgagccttttccagggtctttct 6473609  T

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Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 13608601 - 13608136
Alignment:
Q  11 gaaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtccttgtacatggatacaatc 110  Q
    |||||| |||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  ||| |  |   | ||    
T  13608601 gaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcgcatcatagaaaataggtagaacagtttgtcctgatacttcaaagtattc 13608502  T
Q  111 agcaatatttgccaattcttgcaagcaccatgtggaagaagcgtagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaagc 210  Q
    |||||| ||||||| |||||| |||||||||||||||||||| |||||| ||||||| || |||||||| ||||| ||| |||  || ||||||  ||||    
T  13608501 agcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatgggatccttcaatggcttgttcaagc 13608402  T
Q  211 tcagatgatatatttcccccttttctgacgtttatatcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaattgt 310  Q
    |  |||||||||| | |||||||| | | |||| ||||||| |||||  ||||||||  |||||||||| |||| |||||||||||||||||||||||||    
T  13608401 ttggatgatatatgttcccctttttttaggtttgtatcatctctgaatgcaacaatgtcatttttatga-gagcgccaaaaagatgatcagtgaaattgt 13608303  T
Q  311 tgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatt---tcctcctatttgaagagacactttggatgctactacgagtcattgaaat 407  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||   ||||||||  |||||||||| ||||||||||||||| || |||||||||    
T  13608302 tgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccatttcatcctcctagatgaagagacagtttggatgctactactagccattgaaat 13608203  T
Q  408 tgttaaagccaaaggcccaaaactaacttgctaaggattttgtattttgtttgcactgttgcttgctatgaaact 482  Q
    ||| ||||        ||||||||||||||||||||||  |||| || |||||||||||| |||||| |||||||    
T  13608202 tgtaaaag--------ccaaaactaacttgctaaggatgatgtagttagtttgcactgtttcttgctgtgaaact 13608136  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 33361317 - 33361390
Alignment:
Q  277 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||| ||| ||||||||  |||||||||||||||||| |||||||| |||| |||| | ||||||||||||||    
T  33361317 tgaagggcatcaaaaagaaaatcagtgaaattgttgcgagtgtcttcacctctaaagatgacaaacacatcata 33361390  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 33412747 - 33412810
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||||||| |||||||||||||||||| |||||||| ||||  ||| | ||||||||||||||    
T  33412747 caaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcata 33412810  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 12782319 - 12782386
Alignment:
Q  277 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacac 344  Q
    ||||| |||||||||||||||||||||||||||   || ||||||  |||||  ||||||||||||||    
T  12782319 tgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgtgcctctgaagctcacaaacac 12782386  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 12785768 - 12785831
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||||||||||| |||||||||  ||| ||||||  ||||| ||||||||||||||| |||||    
T  12785768 caaaaagatgatcggtgaaattgaagcgtgtgtctgggcctctaaagctcacaaacacgtcata 12785831  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 33060384 - 33060447
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||||||  |||||||||||||||||| || ||||| |||| |||| | ||||||||||||||    
T  33060384 caaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcata 33060447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 33390902 - 33390965
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||||||  |||| ||||||||||||| |||||||| ||||| ||| | ||||||||||||||    
T  33390902 caaaaagaaaatcaatgaaattgttgcgagtgtcttcacctcggaaggtgacaaacacatcata 33390965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 31244579 - 31244188
Alignment:
Q  12 aaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtccttgtacatggatacaatca 111  Q
    ||||| |||||||||||||||| |||| ||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||  ||| |  || || |||    
T  31244579 aaaggctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaataggtagaacaatttgtcctgttacttcaatgcattca 31244480  T
Q  112 gcaatatttgccaattcttgcaagcaccatgtggaagaagcgtagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaagct 211  Q
    ||||| ||| | | ||| | ||||||||| || |||||||| |||||  |||| || || |||||||| ||| | ||| |||  ||||||||||||||||    
T  31244479 gcaatctttactagttccttcaagcaccacgttgaagaagcatagttccttgaaaagataacaatcaaaatacgggatccttcaatagcttgtagaagct 31244380  T
Q  212 cagatgatatatttcccccttttctgacgtttatatcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaattgtt 311  Q
    |||||||||||||| |||||||  |||  ||| ||||||||||||||  ||||||||  |||||||| ||||  |||||||| |||||||||||||||||    
T  31244379 cagatgatatattttcccctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgtt 31244280  T
Q  312 gcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatttcctcctatttgaagagacactttggatgctactacgagtcattg 403  Q
    ||| |||||  | |||| ||||||||||||||||||||||||||||||| || ||  |||||||| |||| |||||||| ||| || |||||    
T  31244279 gcgtgtgtcgccacctctaaagctcacaaacacatcatatttccatttcatcttaggtgaagagatacttcggatgctattacaagccattg 31244188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 31496207 - 31496144
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    |||||||||||||||||||||||||||| ||||| || |||| |||| | |||||||| |||||    
T  31496207 caaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaacacgtcata 31496144  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 350
Target Start/End: Original strand, 31160061 - 31160165
Alignment:
Q  246 atcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacaca 345  Q
    ||||||||||||  |||| ||||  ||| | ||||| ||| ||||||||||||| |  ||||||||| | ||||||| ||||| |||||||||||| ||     
T  31160061 atcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttggcctctaaagctcacaaaaacg 31160160  T
Q  346 tcata 350  Q
    |||||    
T  31160161 tcata 31160165  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 31482107 - 31482036
Alignment:
Q  283 gcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttc 354  Q
    ||||||||||||||||||||||| ||||| || ||||| || || |  || ||||||||||| |||||||||    
T  31482107 gcaccaaaaagatgatcagtgaatttgttacgtgtgtcatcaccacagaaactcacaaacacgtcatatttc 31482036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 31501377 - 31501314
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    |||||||||||| ||||||||||||||| |||||||| |||| |||  | |||||| |||||||    
T  31501377 caaaaagatgataagtgaaattgttgcgagtgtcttcacctctaaaagtgacaaacgcatcata 31501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 31020690 - 31020763
Alignment:
Q  277 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||| ||| |||||||||||||| |||| |||  ||| || |||||||||| |||| | ||||||||||||||    
T  31020690 tgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacacatcata 31020763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 31030571 - 31030644
Alignment:
Q  277 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||| ||| |||||||||||||| |||| |||  ||| || |||||||||| |||| | ||||||||||||||    
T  31030571 tgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacacatcata 31030644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 31476257 - 31476204
Alignment:
Q  297 atcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    |||||||||||||||||| || ||||| ||||  |||||||||||||| |||||    
T  31476257 atcagtgaaattgttgcgagtatcttcacctctgaagctcacaaacacgtcata 31476204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 17599768 - 17599843
Alignment:
Q  18 tttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtcct 93  Q
    ||||||||||| |||| |||  ||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  17599768 tttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaacagtttgtcct 17599843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 17599893 - 17599945
Alignment:
Q  369 tgaagagacactttggatgctactacgagtcattgaaattgttaaagccaaag 421  Q
    |||||||||||||||||||||||||| || |||||| ||| | ||||||||||    
T  17599893 tgaagagacactttggatgctactactagccattgatattataaaagccaaag 17599945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 14724082 - 14724007
Alignment:
Q  18 tttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtcct 93  Q
    ||||||||||| |||| |||  ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  14724082 tttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaacaatttgtcct 14724007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 14723957 - 14723905
Alignment:
Q  369 tgaagagacactttggatgctactacgagtcattgaaattgttaaagccaaag 421  Q
    |||||||||||||||||||||||||  || |||||| ||| | ||||||||||    
T  14723957 tgaagagacactttggatgctactattagccattgatattataaaagccaaag 14723905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 17437940 - 17437877
Alignment:
Q  287 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 350  Q
    ||||||||  |||||||||||||||||| || ||||| |||| |||| | ||||||||||||||    
T  17437940 caaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcata 17437877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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