View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_40 (Length: 289)
Name: NF11375_low_40
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 47186320 - 47186572
Alignment:
| Q |
18 |
ggaaagtgagtgtcttactaagtatttaatctcatgtacttgctacaccgatcnnnnnnnnnnnnnnnncgaacaatgtttaacttggaagtaaagtttc |
117 |
Q |
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| T |
47186320 |
ggaaagtgagtgtcttactaagtatttaatctcatgtacttgctacaccgatcatatatatatatat--cgaacaatgtttaacttggaagtaaagtttc |
47186417 |
T |
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| Q |
118 |
gtgtggggccataaacccaaatttaaattatttaagcatactcataaatttaaaaagacaaattcttatctacacactacaaaaagtagagtactaatnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186418 |
gtgtggggccataaacccaaatttaaattatttaagcatactcataaatttaaaaagacaaattcttatctacacactacaaaaagtagagtactaataa |
47186517 |
T |
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| Q |
218 |
nnnnntgaattgtacaattaaactttattattcttaataattgttaggacgcatt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186518 |
aaaaatgaattgtacaattaaactttattattcttaataattgttaggacgcatt |
47186572 |
T |
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