View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_42 (Length: 279)
Name: NF11375_low_42
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 43366365 - 43366093
Alignment:
| Q |
11 |
cagagaacaggggtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaata----taaaggaaggagt |
106 |
Q |
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| T |
43366365 |
cagagaacaggggtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaataaatataaaggaaggagt |
43366266 |
T |
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| Q |
107 |
tcagtgaggttaaagtattacttggaatatgtatatctttctttatgtaaccaaattgttttatttaagcatgaatagttcttccatttcattagtagac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366265 |
tcagtgaggttaaagtattacttggaatatgtatatctttctttatgtaaccaattttttttatttaagcatgaatagttcttccatttcattagtagac |
43366166 |
T |
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| Q |
207 |
ataattgcattctgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataacttt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366165 |
ataattgcattctgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataacttt |
43366093 |
T |
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