View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11375_low_44 (Length: 268)
Name: NF11375_low_44
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 4635361 - 4635580
Alignment:
| Q |
28 |
aaaactgtgcatatggcacatgcatgaaattacattttggacaagaacatgtaaatcatgttagttggcaatcgtttatatattttattaaatttttcag |
127 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
4635361 |
aaaactgtgcatacggcacatgcatgaaattacattttggacaagaacatgtaaatcatgttagttagcattcgtttatatattttattaattttttcag |
4635460 |
T |
|
| Q |
128 |
aaagtc-ttgcatccattactcgttacatattttttaatagttcatgaaattggcaatacgttgtgtgttcccgctcgtgttacatatctgtgatccgct |
226 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
4635461 |
aaagtctttgcatccattacacgttacatattttttaatagttcatgaaattggcaatacgttgtgtgtt-ctgctcgtgttacatattcgtgatccgct |
4635559 |
T |
|
| Q |
227 |
cgtgttcggcgaggaaatgtt |
247 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4635560 |
cgtgttcggcgaggaaatgtt |
4635580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 99 - 251
Target Start/End: Original strand, 4641859 - 4642027
Alignment:
| Q |
99 |
tcgtttatatattttattaaatttttcagaaagtcttgcatccattactcgttacatattttttaatagttcatgaaattggcaat-------------- |
184 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4641859 |
tcgtttatatattt-attaaatttttcggaaagtcttgcatctattactcgttacatattttttaatagttcatgaagttggcaatcattttttaatgac |
4641957 |
T |
|
| Q |
185 |
----acgttgtgtgttcccgctcgtgttacatatctgtgatccgctcgtgttcggcgaggaaatgttggtt |
251 |
Q |
| |
|
| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4641958 |
aatcattttgtgtgtt-ccgctcgtgttacatatatgtgatccgctcgtgttcggcgaggaaatgttggtt |
4642027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 4641754 - 4641829
Alignment:
| Q |
22 |
tagttaaaaactgtgcatatggcacatgcatgaaattacattttggacaagaacatgtaaatcatgttagttggca |
97 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
4641754 |
tagttaaaaactgtgcatatgacacatgcatgcaattacattttgggaaagaacatgaaaagcatgttagttggca |
4641829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University