View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_45 (Length: 264)
Name: NF11375_low_45
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 17662471 - 17662721
Alignment:
| Q |
1 |
cttcaaaccctattttctcagttcaattccactgctacatcgatcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattc |
100 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17662471 |
cttcaaaccctattttcacagttcaattcctctgctacatcgatcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattc |
17662570 |
T |
|
| Q |
101 |
tattgatcacaaacccaaaaacaactatgaat---atcatgatactgaaattcagaaacaacaaggttcaaacccta-agttcaaaccctatagnnnnnn |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||| |
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| T |
17662571 |
tattgatcacaaacccaaaaacaactatgaatatcatcatggtactgaaattcaga---aacaaggttcaaaccctatagtt-------------ttttt |
17662654 |
T |
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| Q |
197 |
ngtacactctcctgagccaaacactcacaacatcatgaacaaaccctatgctgcaccttcttctcac |
263 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
17662655 |
tgtacactctcctgagccaaacactcacaacatcatgaacaaaccctattcttcaccttcttctcac |
17662721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 17701612 - 17701358
Alignment:
| Q |
1 |
cttcaaaccctattttctcagttcaattccactgctacatcgatcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17701612 |
cttcaaaccctattttctcagttcaattccactgctacatcgatca-----------tgaagagttctttttcttcaccctatttccattttcatcattc |
17701524 |
T |
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| Q |
101 |
tattgatcacaaacccaaaaacaactatgaata---tcatgatactgaaattcagaaacaacaaggttcaaaccctaagttcaaaccctatagnnnnnnn |
197 |
Q |
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|| ||||||||||||||||||||||||||||| ||||| || ||||||| ||||||| |||| ||||||||||||||||||||||||||| |
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| T |
17701523 |
aatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaagattcaaaccctaagttcaaaccctatagtttttct |
17701424 |
T |
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| Q |
198 |
gtacactctcctgagccaaacactcacaacatcatgaacaaaccctatgctgcaccttcttctcac |
263 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||||| |||| || |||||||||||||| |
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| T |
17701423 |
gtacactctcctgagcaaatcactcacaacatcatgaacaaacactattcttcaccttcttctcac |
17701358 |
T |
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