View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_5 (Length: 580)

Name: NF11375_low_5
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_5
NF11375_low_5
[»] chr3 (2 HSPs)
chr3 (8-566)||(30883727-30884284)
chr3 (419-459)||(26618524-26618564)
[»] chr4 (1 HSPs)
chr4 (418-459)||(29236677-29236718)
[»] chr7 (1 HSPs)
chr7 (415-459)||(26554297-26554341)
[»] chr2 (3 HSPs)
chr2 (418-458)||(19546521-19546561)
chr2 (418-459)||(17793393-17793434)
chr2 (418-459)||(32973651-32973692)
[»] chr8 (1 HSPs)
chr8 (418-455)||(31384038-31384075)
[»] chr6 (1 HSPs)
chr6 (419-459)||(6120015-6120055)
[»] chr1 (1 HSPs)
chr1 (189-233)||(18938097-18938141)


Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Original strand, 30883727 - 30884284
Alignment:
Q  8 tactagtactatacaatgcagtttgttgtcaatattaaaaaacaaagtaaaaatagtttgttaaaaatagnnnnnnnnactataaatactgaaaacacta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||    
T  30883727 tactagtactatacaatgcagtttgttgtcaatattaaaaaacaaagtaaaaatagtttgttaaaaatagttttttttactataaatactaaaaacacta 30883826  T
Q  108 tttttcaacacttcagtatgatgtgtaacacactcaattgttgctttcaatcaattagatacaacca-tttatatgtgagttaagataagtgttcttgaa 206  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30883827 tttttcaacacttcagtatgatgt--aacacactcaattgttgctttgaatcaattagatacaaccactttatatgtgagttaagataagtgttcttgaa 30883924  T
Q  207 aatttgcatcacatggggagtataatgcaaggtcgccatatcactatattatgaaaaatcctnnnnnnnttaaagttttcttgtggcacgcgacgaggag 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  30883925 aatttgcatcacatggggagtataatgcaaggtcggcatatcactatattatgaaaaatcctaaaaaaattaaagttttcttgtggcacgcgacgaggag 30884024  T
Q  307 ttgcctttctacaagagaaagatttcgcacaagaagagttcaatgtgcatatcattgtgaggaatcagcgtcgtctccaccaattcagaggctcccattg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||| |||    
T  30884025 ttgcctttctacaagagaaagatttcgcacaagaagagttcaatgtgcagatcattgtgaggaaccagggtcgtctccaacaattcagaggctcccgttg 30884124  T
Q  407 taatgaaaagcgacaaacatctacgttctagttaaatatacgagcaatggttcgagagtttgtttcaatctcaaattggttgtgacattgtttttaaggt 506  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  30884125 taatgaaaagctacaaacatctacattctagttaaatatacgagcaatggtttgagagtttgtttcaatctcaagttggttgtgacattgtttttaaggt 30884224  T
Q  507 caagtgtgaaagctttaaggctcataaggtgattcttgctgcgaggtcgcctgtgtttat 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30884225 caagtgtgaaagctttaaggctcataaggtgattcttgctgcgaggtcgcctgtgtttat 30884284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 26618524 - 26618564
Alignment:
Q  419 acaaacatctacgttctagttaaatatacgagcaatggttc 459  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  26618524 acaaacatctacgttctagttaaatatatgagcaatggttc 26618564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 29236718 - 29236677
Alignment:
Q  418 gacaaacatctacgttctagttaaatatacgagcaatggttc 459  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  29236718 gacaaacatctacgttctagtaaaatatacgagcaatggttc 29236677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 26554297 - 26554341
Alignment:
Q  415 agcgacaaacatctacgttctagttaaatatacgagcaatggttc 459  Q
    |||||||||||| |||||||||||||||||||||| |||||||||    
T  26554297 agcgacaaacatatacgttctagttaaatatacgaacaatggttc 26554341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 19546521 - 19546561
Alignment:
Q  418 gacaaacatctacgttctagttaaatatacgagcaatggtt 458  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  19546521 gacaaatatctacattctagttaaatatacgagcaatggtt 19546561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 17793434 - 17793393
Alignment:
Q  418 gacaaacatctacgttctagttaaatatacgagcaatggttc 459  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||    
T  17793434 gacaaacatttacattctagttaaatatacgagcaatagttc 17793393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 32973692 - 32973651
Alignment:
Q  418 gacaaacatctacgttctagttaaatatacgagcaatggttc 459  Q
    |||||||||||| ||||||||||||||||  |||||||||||    
T  32973692 gacaaacatctatgttctagttaaatatataagcaatggttc 32973651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 31384038 - 31384075
Alignment:
Q  418 gacaaacatctacgttctagttaaatatacgagcaatg 455  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  31384038 gacaaacatcaacgttctagttaaatatacgagtaatg 31384075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 6120015 - 6120055
Alignment:
Q  419 acaaacatctacgttctagttaaatatacgagcaatggttc 459  Q
    |||||||||||| | |||||||||||||| |||||||||||    
T  6120015 acaaacatctacatcctagttaaatatacaagcaatggttc 6120055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 18938097 - 18938141
Alignment:
Q  189 aagataagtgttcttgaaaatttgcatcacatggggagtataatg 233  Q
    ||||||||||||| || |||||| ||||||| |||||||||||||    
T  18938097 aagataagtgttcctggaaatttacatcacacggggagtataatg 18938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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