View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_54 (Length: 248)
Name: NF11375_low_54
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 17661754 - 17661558
Alignment:
| Q |
15 |
gtacattttgttttaaattgagtcaaggcttaatcctgaggtcaatgatccagtcatggagtcaaaggccaacaagacatatacgtacagtacgaaccac |
114 |
Q |
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| T |
17661754 |
gtacattttgttttgaactgagtcaatgtttaatcctgaggtcaatgatccagtcattaagtcaaaggccaacaagacatatacgtccaatacgaaccac |
17661655 |
T |
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| Q |
115 |
ttacaacaataaagatttgtgctacaggcaataaataacaatgcatttctcgaggttttgaggtgagagaggagccttggttgaccatggagccttg |
211 |
Q |
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| T |
17661654 |
ttacaacaataaagatttgtgctacagacaataaataacaatgcatttcccaaggttttgaggtgagagaggagccttggttgaccatggaggcttg |
17661558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 17697829 - 17697704
Alignment:
| Q |
39 |
aaggcttaatcctgaggtcaatgatccagtcatggagtcaaaggccaacaagacatatacgtacagtacgaaccacttacaacaataaagatttgtgcta |
138 |
Q |
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| T |
17697829 |
aaggcttaatcccgaggtcaatgctccggtcgtggagtcaaaggccaacaagacatataagttcagtacaaaccacttacaacaataaagagttttgcta |
17697730 |
T |
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| Q |
139 |
caggcaataaataacaatgcatttct |
164 |
Q |
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| T |
17697729 |
cagacaataaataaaaatgcatttct |
17697704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 17701929 - 17702041
Alignment:
| Q |
53 |
aggtcaatgatccagtcatggagtcaaaggcc-aacaagacatatacgtacagtacgaaccacttacaacaataaagatttgtgctacaggcaataaata |
151 |
Q |
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| T |
17701929 |
aggtcaatgatctaatcgtggagtcaaaggccaaacaagacatacaagtcaagtacaaaccatctaatacagtaaaaagttgtgctgcagaccataaata |
17702028 |
T |
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| Q |
152 |
acaatgcatttct |
164 |
Q |
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| T |
17702029 |
acaaagcatttct |
17702041 |
T |
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