View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_56 (Length: 244)
Name: NF11375_low_56
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 44154132 - 44154275
Alignment:
| Q |
17 |
acacacgtggaagaatcgaagccggtatttaacatatactacgtgtcatgtttggtatggtcaacatgg-cttaccatttacactcgcacacctcaccca |
115 |
Q |
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| T |
44154132 |
acacacgtggaagaatcgaagccggtatttaacatatactacgtgtcatgtttggtatggtcaacatgggcttaccatttacactcgcacacctcaccca |
44154231 |
T |
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| Q |
116 |
cccatagcataatataaggcacatgactctaatatctctctcaa |
159 |
Q |
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| T |
44154232 |
cccataacataatataaggcacatgactctaatatctctctcaa |
44154275 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 44155031 - 44155108
Alignment:
| Q |
151 |
ctctctcaaagtctaatat--acacaactttgaacgttgaaattattaaaactgcaccgtaaccacattgagttatat |
226 |
Q |
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| T |
44155031 |
ctctctcaaagcctaatatatacacaactttcaacgttgaaattattaaaactgcaccgtaaccacattgagttatat |
44155108 |
T |
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