View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_61 (Length: 239)
Name: NF11375_low_61
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42938983 - 42938768
Alignment:
| Q |
1 |
tttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaattggtgaaataccaacaataacagagaagtaatgaattttgagtaa |
100 |
Q |
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| T |
42938983 |
tttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaa--ggtgaaataccaacaataacagagaagtaatgaattttgagtaa |
42938886 |
T |
|
| Q |
101 |
atgatattttaatttgtaacagctagctatattatattataactcaaat--gacacatgaatagtagtgaataatattgaatgcaagaaaaatgtgttca |
198 |
Q |
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| T |
42938885 |
atgatattttaatttgtatc----agctatattatattataactcaaatgagacacatgaatagtagtgaataatattgaatgc---aaaaatgtgttca |
42938793 |
T |
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| Q |
199 |
cttaagagtatgggagagtcctctt |
223 |
Q |
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| T |
42938792 |
cataagagaatgggagagtcctctt |
42938768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 27464153 - 27463974
Alignment:
| Q |
3 |
tataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaattggtgaaataccaacaataaca-----gagaagtaatgaattttgag |
97 |
Q |
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| T |
27464153 |
tataagatgcatcaaattaaattaatgtgttttgcattgctaaagaaataaa--ggtgaaataccaataatgacattgacgagaagcaatgaattttgag |
27464056 |
T |
|
| Q |
98 |
taaatgatattttaatttgtaacagctagctatattatattataactcaaatgacacatgaatagtagtgaataatattgaatgca |
183 |
Q |
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| T |
27464055 |
taaataatactttaatttgcaac----ggctatattatattgtaactcaaatgacaaatgactagtagtgaatactattggatgca |
27463974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 27484336 - 27484267
Alignment:
| Q |
127 |
ctatattatattataactcaaatgacacatgaatagtagtgaataatattgaatgcaagaaaaatgtgttcac |
199 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||| |
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| T |
27484336 |
ctatattatatcgtaactcaaatgacacatgaatattagtgaatactattggatgc---aaaaatgtgttcac |
27484267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 9350273 - 9350232
Alignment:
| Q |
3 |
tataagatgcatcaaattatgttaatgtgttttgcattgcta |
44 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||| |
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| T |
9350273 |
tatacgatgcatcaaattatgttaacgtgttttgcattgcta |
9350232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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