View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11375_low_62 (Length: 239)
Name: NF11375_low_62
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_62 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10032110 - 10032333
Alignment:
| Q |
1 |
tgatagaccttcactgatgatataacaggcgcgtaagacgaaagcatgaaatggattcgaggatatggtacaaggttagtttggaattcggaaatgtcca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10032110 |
tgatagaccttcactgacgatataacaggcgcgtaagacgaaagcatgaaatggattcgaggatacggtacaaggttagtttggaattcggaaatgtcca |
10032209 |
T |
|
| Q |
101 |
cgttgattgcaccgtcgaatctcaatgaagttgttaaagacgaaatactttgcgatattaagcgatttaagttattgtatgttggtctttctatgtctaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10032210 |
cgttgattgcaccgtcgaatctcaatgaagttgttaaagacgaaatactttgcgatattaagcgatttaagttattgtacgttggtctttctatgtctaa |
10032309 |
T |
|
| Q |
201 |
tgatcttctgcaaatgtcatagat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10032310 |
tgatcttctgcaaatgtcatagat |
10032333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 33270479 - 33270364
Alignment:
| Q |
19 |
gatataacaggcgcgtaagacgaaagcatgaaatggattcgaggatatggtacaaggttagtttggaattcggaaatgtccacgttgattgcaccgtcga |
118 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||||| || | || ||||||||||||||||||||| | |
|
|
| T |
33270479 |
gatattacaggggcataagacgaaagcataaaatggatacgaggatatggaaccaggttagtctggaactcagtaacgtccacgttgattgcaccgtcaa |
33270380 |
T |
|
| Q |
119 |
atctcaatgaagttgt |
134 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
33270379 |
atctcaaggaagttgt |
33270364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 35669600 - 35669652
Alignment:
| Q |
22 |
ataacaggcgcgtaagacgaaagcatgaaatggattcgaggatatggtacaag |
74 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || |||||||| || ||||| |
|
|
| T |
35669600 |
ataacaggtgcataagacgaaagcatgaaatgaatacgaggatacggcacaag |
35669652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University