View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_68 (Length: 217)
Name: NF11375_low_68
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 6945472 - 6945656
Alignment:
| Q |
15 |
atgaataaaaagattaggcggcgttaaaaaattaaaacccaaccatctcataacctcactccacaccgtggctatcacctcataatggatgaataaatgc |
114 |
Q |
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| T |
6945472 |
atgaataaaaagattaggcggcgttaaaaaattaaaacccaaccatctcataacctcactccacaccgtggctatcacctcataatggatgaataaatgc |
6945571 |
T |
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| Q |
115 |
accgccgtttcatcctcaccaccacaaaacacacaacgcttagactcttcacaccccaataaccgtctcttgtgaaggttcacct |
199 |
Q |
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| T |
6945572 |
accgccgtttcatcctcaccaccacaaaacacacaacgcttagactcttcacaccccaataaccgtctcttgtgaaggttcacct |
6945656 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 655083 - 655013
Alignment:
| Q |
115 |
accgccgtttcatcctcaccaccacaaaacacacaacgcttagactcttcacaccccaataaccgtctctt |
185 |
Q |
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| T |
655083 |
accgccgtttcatcatcaccaccacaaaacacacaccgcttagatacttccacccccactaaccgtctctt |
655013 |
T |
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