View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_69 (Length: 216)

Name: NF11375_low_69
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_69
NF11375_low_69
[»] chr4 (8 HSPs)
chr4 (20-204)||(9593873-9594057)
chr4 (20-204)||(9582080-9582264)
chr4 (20-204)||(9587775-9587959)
chr4 (20-192)||(9568988-9569160)
chr4 (20-197)||(54295185-54295362)
chr4 (20-199)||(9602687-9602860)
chr4 (78-177)||(9574177-9574276)
chr4 (74-153)||(37895831-37895910)
[»] scaffold0613 (1 HSPs)
scaffold0613 (76-182)||(49-155)
[»] scaffold0134 (1 HSPs)
scaffold0134 (78-182)||(16345-16449)
[»] chr6 (17 HSPs)
chr6 (74-178)||(29145146-29145250)
chr6 (74-197)||(34281768-34281891)
chr6 (76-197)||(34258359-34258480)
chr6 (74-199)||(34278550-34278675)
chr6 (74-153)||(29131158-29131237)
chr6 (74-204)||(29299928-29300058)
chr6 (74-199)||(29152232-29152357)
chr6 (74-182)||(23218715-23218823)
chr6 (81-153)||(29123978-29124050)
chr6 (74-129)||(25528981-25529036)
chr6 (75-129)||(26090881-26090935)
chr6 (20-204)||(29012634-29012812)
chr6 (81-204)||(32744958-32745081)
chr6 (81-126)||(29137133-29137178)
chr6 (76-129)||(32960909-32960962)
chr6 (75-152)||(25319459-25319536)
chr6 (75-152)||(26149152-26149229)
[»] chr7 (2 HSPs)
chr7 (74-192)||(42446188-42446306)
chr7 (74-195)||(7793670-7793791)
[»] scaffold0054 (2 HSPs)
scaffold0054 (74-135)||(33634-33695)
scaffold0054 (74-135)||(39985-40046)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 9594057 - 9593873
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594057 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 9593958  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgc 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593957 taacacccattccctcatacttggatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgc 9593873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 9582264 - 9582080
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||  |||||||    
T  9582264 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccctggagggaccatgtgtggtatcattttacttgagcaatgaggaattcttca 9582165  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgc 204  Q
    |||||  ||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||| ||||    
T  9582164 taacatacataccctcatacttagatgattgtttcaatcttcacaccttgtggataaacttggcggtgttaaatgggtccattgc 9582080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 9587959 - 9587775
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||  |||||||    
T  9587959 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccctggagggaccatgtgtggtatcattttacttgagcaatgaggaattcttca 9587860  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgc 204  Q
    |||||  ||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||| ||||    
T  9587859 taacatacataccctcatacttagatgattgtttcaatcttcacaccttgtggataaacttggcggtgttaaatgggtccattgc 9587775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 9568988 - 9569160
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    |||||| ||||||||||||||||||||  ||||||||  || ||||    ||| ||||||||||||||||| ||||||||||||||||||   |||||||    
T  9568988 tacatgaatggtgtgtgtcattggttgtgtgaagaagaagaagatagtcaggatggaccatgtttggtatcattttacttgagcaatgagaaattcttca 9569087  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaa 192  Q
    |||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  9569088 taacacccgttccctcatacttggatgattgtttcgatgttcaagcattgtggataaacttggtggtgttaaa 9569160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 54295362 - 54295185
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    |||||||||||||||||||||||||||  |||||    ||| ||||   || | ||||||||||||||||| |||||||||||||||||| |||| ||||    
T  54295362 tacatggatggtgtgtgtcattggttgtgtgaagtgcatgaagataatctgcatggaccatgtttggtatcattttacttgagcaatgagatgtttttca 54295263  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggt 197  Q
    ||||||||||  ||||| |||||||||||||||| ||| |||| ||||||||||||| ||||| |||  |||||||||    
T  54295262 taacacccatatcctcaaacttagatgattgttttgatgttcaagcattgtggataaccttggcggtactaaatgggt 54295185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 9602860 - 9602687
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    |||||||||||||||||||||||||||   ||||||| ||| ||||     || |||  ||| |||||||| |||||||||||||||||||| |||||||    
T  9602860 tacatggatggtgtgtgtcattggttgtgggaagaagatgaagatagtcaagatggaagatggttggtatcattttacttgagcaatgaggtattcttca 9602761  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcc 199  Q
    |||||||||| ||||| ||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||    
T  9602760 taacacccataccctcgtacttagatgattgtttc------aaagcattgtggataaacttggtggtgttaaatgggtcc 9602687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 9574177 - 9574276
Alignment:
Q  78 catgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaa 177  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||    
T  9574177 catgtttggtatcattttacttgagcaatgaggaattcttcataacacccataccctcatacttagatgatagtttcgatgttcaagcattgtggataaa 9574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 37895831 - 37895910
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgttt 153  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| |||||||||| |||||    
T  37895831 ggaccatgtttggtatcattttacctgagcaatgaggtgttcttcgtaacacccataccctcagacttagatgactgttt 37895910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 49 - 155
Alignment:
Q  76 accatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggata 175  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||| || | ||||  ||||||    
T  49 accatgtttggtgtcattttacttgagcaatgaggtgttcttaataacacccataccctcaaacttagatgattgttttgatgttgaagcatcctggata 148  T
Q  176 aacttgg 182  Q
    |||||||    
T  149 aacttgg 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 16449 - 16345
Alignment:
Q  78 catgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaa 177  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||| || | ||||  ||||||||    
T  16449 catgtttggtgtcattttacttgagcaatgaggtgttcttaataacacccataccctcaaacttagatgattgttttgatgttgaagcatcatggataaa 16350  T
Q  178 cttgg 182  Q
    |||||    
T  16349 cttgg 16345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 29145146 - 29145250
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    |||||||||||||| || ||||||||||| | ||||||||||||  |||||||||| |||||| |||||||||||||||||||| || | ||||||||||    
T  29145146 ggaccatgtttggtgtcattttacttgagtagtgaggtgttcttagtaacacccataccctcagacttagatgattgtttcgatgttgaagcattgtgga 29145245  T
Q  174 taaac 178  Q
    |||||    
T  29145246 taaac 29145250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 34281768 - 34281891
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||| |||| |||| ||| || || ||||||||||||| ||| || | |||  |||||    
T  34281768 ggaccatgtttggtatcattttacttgagcaatgaagtgtccttcacaacagccatacccccagacgtagatgattgttttgatgttaaagcaaagtgga 34281867  T
Q  174 taaacttggtggtgttaaatgggt 197  Q
     |||||||||||||||||||||||    
T  34281868 aaaacttggtggtgttaaatgggt 34281891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 34258480 - 34258359
Alignment:
Q  76 accatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggata 175  Q
    ||||||||||||||| ||| |||| |||||||| |||||||||| |||||| || ||||||||| | ||||||||||| ||| || | |||  |||||||    
T  34258480 accatgtttggtatcatttgacttaagcaatgatgtgttcttcaaaacaccaataccctcatacgttgatgattgttttgatgttaaagcaaagtggata 34258381  T
Q  176 aacttggtggtgttaaatgggt 197  Q
    ||||||| ||||||||||||||    
T  34258380 aacttggcggtgttaaatgggt 34258359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 34278675 - 34278550
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    ||||| ||||||||||| ||||||||||||||||| | || ||||| ||||||||||||| |  |  ||||||||||||| |||  |  ||||  |||||    
T  34278675 ggaccttgtttggtatcattttacttgagcaatgaagcgtccttcacaacacccattcccccggaagtagatgattgttttgatgatagcgcaaagtgga 34278576  T
Q  174 taaacttggtggtgttaaatgggtcc 199  Q
    ||||||||||||||||||||||||||    
T  34278575 taaacttggtggtgttaaatgggtcc 34278550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 29131158 - 29131237
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgttt 153  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||| |||||| || |||||||||||||    
T  29131158 ggaccatgtttggtatcattttacttgagcaatgaagtgttcgtcacaacacccataccctcagacgtagatgattgttt 29131237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 29299928 - 29300058
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    |||||||||||||| || |||||||||||||||||||||||| | |||||||| ||| ||||  ||  |||||||||||| ||| ||   |||  |||||    
T  29299928 ggaccatgtttggtgtcattttacttgagcaatgaggtgttccttataacacctatttcctcggacgaagatgattgttttgatgttggagcaaagtgga 29300027  T
Q  174 taaacttggtggtgttaaatgggtcctttgc 204  Q
    |||||||||  ||||||||||||||| ||||    
T  29300028 taaacttggctgtgttaaatgggtccattgc 29300058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 29152357 - 29152232
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    ||||||||||||||||| ||||||||||||||||| |||| | ||| ||||||||| | | || || ||||||| ||||| ||| || | |||  |||||    
T  29152357 ggaccatgtttggtatcattttacttgagcaatgaagtgtccctcacaacacccatactcccagacgtagatgactgttttgatgttaaagcaaagtgga 29152258  T
Q  174 taaacttggtggtgttaaatgggtcc 199  Q
    |||||||||  |||||||||||||||    
T  29152257 taaacttgggtgtgttaaatgggtcc 29152232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 23218823 - 23218715
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    |||||||||||||| || ||||||||||||||||||||||||||  |||||||||| |  ||| |||||||||||| ||| ||| |  | |||| |||||    
T  23218823 ggaccatgtttggtgtcattttacttgagcaatgaggtgttcttagtaacacccatactttcaaacttagatgattcttttgatgtggaagcatcgtgga 23218724  T
Q  174 taaacttgg 182  Q
    |||||||||    
T  23218723 taaacttgg 23218715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 29123978 - 29124050
Alignment:
Q  81 gtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgttt 153  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||| |||||| |  |||||| ||||||    
T  29123978 gtttggtatcgttttacttgagcaacgaagtgttcttcataacacccataccctcagatgtagatgtttgttt 29124050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 25529036 - 25528981
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccat 129  Q
    ||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||    
T  25529036 ggaccatgtttggtatcatttaacttgagcaatgaggtgttcgtcctaacacccat 25528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 26090935 - 26090881
Alignment:
Q  75 gaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccat 129  Q
    |||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||    
T  26090935 gaccatgtctggtatcatttaacttgagcaatgaggtgttctttataacacccat 26090881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 29012634 - 29012812
Alignment:
Q  20 tacatggatggtgtgtgtcattggttggctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttca 119  Q
    ||||||||||| ||||||||||||||| |||||||||      ||| |   |||| | ||||||||||||| |||||||| |||||||||| ||||||||    
T  29012634 tacatggatggagtgtgtcattggttgtctgaagaag------atagcaatgaggaatcatgtttggtatcattttactttagcaatgaggggttcttca 29012727  T
Q  120 taacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgc 204  Q
     ||||||| | || ||| |  |||| ||||| |  |||  |   ||||||||| ||||||||| ||| |||||||||||| ||||    
T  29012728 caacacccttaccgtcagaagtagaggattggtctgatgatttagcattgtggttaaacttggcggtattaaatgggtccattgc 29012812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 32745081 - 32744958
Alignment:
Q  81 gtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtggataaactt 180  Q
    |||||||||| |||||||||||||| || | |||||||||||||||| | |||||| |  ||||||||| ||| ||| || |  |    |||| ||||||    
T  32745081 gtttggtatcgttttacttgagcaaagaagggttcttcataacacccgtaccctcagatgtagatgattcttttgatgttgaaaccaattggagaaactt 32744982  T
Q  181 ggtggtgttaaatgggtcctttgc 204  Q
    || |||||||||||||||| ||||    
T  32744981 ggcggtgttaaatgggtccattgc 32744958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 29137133 - 29137178
Alignment:
Q  81 gtttggtatccttttacttgagcaatgaggtgttcttcataacacc 126  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||    
T  29137133 gtttggtatcgttttacttgagcagtgaagtgttcttcataacacc 29137178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 32960962 - 32960909
Alignment:
Q  76 accatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccat 129  Q
    ||||||||||||||| ||||| |||||||||||||||||| |  ||||||||||    
T  32960962 accatgtttggtatcattttatttgagcaatgaggtgttccttgtaacacccat 32960909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 25319536 - 25319459
Alignment:
Q  75 gaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtt 152  Q
    |||||||||||||||| ||| |||| |||| ||||||||| ||  ||||||| || |||||| || || |||||||||    
T  25319536 gaccatgtttggtatcttttcacttaagcagtgaggtgttttttgtaacacctataccctcaaacatatatgattgtt 25319459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 26149229 - 26149152
Alignment:
Q  75 gaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtt 152  Q
    |||||||||||||||| ||| |||| |||| ||||||||| ||  ||||||| || |||||| || || |||||||||    
T  26149229 gaccatgtttggtatcttttcacttaagcagtgaggtgttttttgtaacacctataccctcaaacatatatgattgtt 26149152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 42446188 - 42446306
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||  ||||| || |||||| ||||||||| ||||||| || ||   | || |||||    
T  42446188 ggaccatgtttggtatcatttgacttgagcaatgatgtattcttcaccacacctataccctcagacttagatggttgtttctatgttggagaatcgtgga 42446287  T
Q  174 taaacttggtggtgttaaa 192  Q
    |||||||||| ||||||||    
T  42446288 taaacttggttgtgttaaa 42446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 7793670 - 7793791
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttagatgattgtttcgatcttcacgcattgtgga 173  Q
    |||| ||||||| |||| ||||||||||||||||||| ||||||||||||||| || || ||| |   ||||||||||||  |  || | || | |||||    
T  7793670 ggactatgtttgctatctttttacttgagcaatgaggcgttcttcataacacctataccttcagatgaagatgattgttttaaatttaaagcttcgtgga 7793769  T
Q  174 taaacttggtggtgttaaatgg 195  Q
    |||| |||||||||||||||||    
T  7793770 taaatttggtggtgttaaatgg 7793791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 33695 - 33634
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctc 135  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||  ||||||||||| |||||    
T  33695 ggaccatgtttagtatcattttacttgagaaatgaggtgttctgtataacacccataccctc 33634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 40046 - 39985
Alignment:
Q  74 ggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctc 135  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||  ||||||||||| |||||    
T  40046 ggaccatgtttagtatcattttacttgagaaatgaggtgttctgtataacacccataccctc 39985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University