View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_74 (Length: 205)
Name: NF11375_low_74
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 34553895 - 34553717
Alignment:
| Q |
12 |
agcaaaggtccaaagtgaaatccacctatgggataaaacacttgttgcgatagcatctttggttggtaggaatgaaaggatataagcaattacctcattt |
111 |
Q |
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| T |
34553895 |
agcaaaagtccaaagtgaaatccacctatgggataaaacacttgttgtgatagcatctttggttggtaggaatgaaaggatataagcaattacctcattt |
34553796 |
T |
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| Q |
112 |
ggtaatctactgatcctatcaacttgcctttccacttttctttctgtatgccctaaagaagaggaagaagaaaaacaac |
190 |
Q |
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| T |
34553795 |
ggtaatctactgatcctatcaacttgcctttccacttttctttctgtatgccctaaagaagaggaagaagaaaaacaac |
34553717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 36283164 - 36283046
Alignment:
| Q |
19 |
gtccaaagtgaaatccacctatgggataaaacacttgttgcgatagcatctttggttggtaggaatgaaaggatataagcaattacctcatttggtaatc |
118 |
Q |
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| T |
36283164 |
gtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaac |
36283065 |
T |
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| Q |
119 |
tactgatcctatcaacttg |
137 |
Q |
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| T |
36283064 |
tactgatcctatcaacttg |
36283046 |
T |
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