View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11375_low_8 (Length: 572)

Name: NF11375_low_8
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11375_low_8
NF11375_low_8
[»] chr2 (25 HSPs)
chr2 (18-559)||(37125848-37126395)
chr2 (112-498)||(33946621-33946995)
chr2 (199-403)||(25630036-25630240)
chr2 (331-463)||(32980633-32980759)
chr2 (368-454)||(38208757-38208841)
chr2 (213-293)||(21483370-21483449)
chr2 (345-454)||(17137330-17137437)
chr2 (342-428)||(18880132-18880216)
chr2 (344-404)||(28272355-28272415)
chr2 (213-257)||(31715677-31715721)
chr2 (345-412)||(38703253-38703320)
chr2 (345-454)||(15912113-15912220)
chr2 (346-454)||(17309364-17309470)
chr2 (359-412)||(6404532-6404584)
chr2 (338-411)||(14913212-14913285)
chr2 (339-404)||(26616287-26616351)
chr2 (343-454)||(7941156-7941265)
chr2 (399-463)||(31715492-31715556)
chr2 (359-454)||(44760464-44760556)
chr2 (345-412)||(45117477-45117544)
chr2 (370-454)||(1209543-1209625)
chr2 (402-492)||(18965403-18965495)
chr2 (359-412)||(45234646-45234698)
chr2 (419-475)||(5462375-5462431)
chr2 (419-463)||(43334154-43334198)
[»] chr6 (14 HSPs)
chr6 (108-500)||(19630220-19630615)
chr6 (133-286)||(17521516-17521667)
chr6 (133-350)||(25180462-25180677)
chr6 (223-307)||(12801565-12801647)
chr6 (223-293)||(12801821-12801891)
chr6 (417-482)||(17523029-17523094)
chr6 (345-454)||(31271751-31271859)
chr6 (345-412)||(304159-304226)
chr6 (345-412)||(16395723-16395790)
chr6 (352-428)||(6662840-6662916)
chr6 (345-412)||(31318921-31318988)
chr6 (345-454)||(9304583-9304690)
chr6 (411-500)||(20386052-20386141)
chr6 (368-412)||(11975411-11975455)
[»] chr8 (15 HSPs)
chr8 (74-499)||(28286029-28286456)
chr8 (213-293)||(4258385-4258465)
chr8 (344-503)||(16795411-16795561)
chr8 (345-470)||(19329560-19329685)
chr8 (346-492)||(24733861-24734000)
chr8 (343-408)||(5459796-5459861)
chr8 (368-454)||(32338259-32338343)
chr8 (346-430)||(39318248-39318330)
chr8 (345-454)||(40104877-40104984)
chr8 (345-492)||(14194752-14194899)
chr8 (345-412)||(6347715-6347782)
chr8 (345-412)||(11076633-11076700)
chr8 (345-412)||(32947428-32947495)
chr8 (359-412)||(43098194-43098246)
chr8 (345-412)||(37098735-37098802)
[»] chr5 (35 HSPs)
chr5 (150-492)||(15811664-15812007)
chr5 (150-492)||(15728010-15728354)
chr5 (69-260)||(23342380-23342571)
chr5 (133-307)||(23251365-23251538)
chr5 (339-411)||(15777508-15777580)
chr5 (213-293)||(17978206-17978286)
chr5 (215-303)||(27496949-27497037)
chr5 (344-497)||(27688290-27688439)
chr5 (212-296)||(22909551-22909635)
chr5 (349-454)||(37013233-37013336)
chr5 (346-500)||(27950499-27950650)
chr5 (348-474)||(28444190-28444311)
chr5 (345-454)||(38679090-38679197)
chr5 (373-500)||(22415616-22415739)
chr5 (345-454)||(26279458-26279565)
chr5 (339-411)||(23227379-23227450)
chr5 (345-454)||(16513217-16513324)
chr5 (425-492)||(22909352-22909419)
chr5 (447-510)||(23342153-23342215)
chr5 (345-454)||(8735097-8735204)
chr5 (345-463)||(27347070-27347183)
chr5 (347-498)||(27497081-27497223)
chr5 (337-407)||(36310591-36310662)
chr5 (345-412)||(37029965-37030032)
chr5 (345-412)||(37883846-37883913)
chr5 (369-412)||(2606004-2606047)
chr5 (346-471)||(8240879-8241003)
chr5 (343-408)||(18922835-18922901)
chr5 (359-412)||(3557040-3557092)
chr5 (425-498)||(17977998-17978071)
chr5 (359-412)||(27114721-27114773)
chr5 (345-412)||(8298887-8298954)
chr5 (345-412)||(11719585-11719652)
chr5 (359-454)||(12724092-12724184)
chr5 (359-454)||(12785575-12785667)
[»] chr1 (25 HSPs)
chr1 (200-503)||(34550991-34551298)
chr1 (339-463)||(15474350-15474472)
chr1 (345-454)||(12700180-12700287)
chr1 (345-426)||(44496888-44496968)
chr1 (346-411)||(43253131-43253195)
chr1 (368-412)||(22859096-22859140)
chr1 (345-412)||(27217221-27217288)
chr1 (345-412)||(48964631-48964698)
chr1 (368-454)||(23983648-23983732)
chr1 (345-454)||(29961800-29961907)
chr1 (368-454)||(7562620-7562705)
chr1 (399-453)||(30516386-30516440)
chr1 (345-454)||(33801734-33801841)
chr1 (112-169)||(34550925-34550981)
chr1 (214-303)||(41384062-41384151)
chr1 (359-412)||(50261641-50261693)
chr1 (368-412)||(41086843-41086887)
chr1 (368-412)||(41091611-41091655)
chr1 (345-412)||(49852129-49852196)
chr1 (389-500)||(22426404-22426510)
chr1 (345-454)||(38861095-38861202)
chr1 (347-412)||(3517261-3517326)
chr1 (59-93)||(41368283-41368317)
chr1 (368-412)||(42882267-42882311)
chr1 (368-412)||(44755075-44755119)
[»] chr7 (17 HSPs)
chr7 (61-500)||(19514260-19514705)
chr7 (344-491)||(18501643-18501785)
chr7 (213-296)||(1380674-1380757)
chr7 (213-296)||(1386778-1386861)
chr7 (345-454)||(33951337-33951444)
chr7 (345-426)||(34847479-34847558)
chr7 (345-454)||(35794868-35794975)
chr7 (359-428)||(31267822-31267888)
chr7 (345-412)||(36311747-36311814)
chr7 (419-474)||(15030622-15030677)
chr7 (390-453)||(20171989-20172051)
chr7 (345-454)||(46255268-46255375)
chr7 (359-412)||(14816325-14816377)
chr7 (359-412)||(15263321-15263373)
chr7 (345-412)||(25528776-25528843)
chr7 (368-412)||(43458609-43458653)
chr7 (348-404)||(29883181-29883237)
[»] chr3 (24 HSPs)
chr3 (59-262)||(27025501-27025703)
chr3 (59-262)||(27036707-27036909)
chr3 (120-307)||(12719306-12719490)
chr3 (213-291)||(24628451-24628529)
chr3 (213-307)||(33844582-33844675)
chr3 (210-307)||(1477176-1477272)
chr3 (338-411)||(1885387-1885460)
chr3 (213-293)||(54310385-54310465)
chr3 (373-452)||(29583456-29583531)
chr3 (368-454)||(36402451-36402535)
chr3 (345-453)||(41193375-41193481)
chr3 (341-402)||(11161982-11162043)
chr3 (345-412)||(32530208-32530275)
chr3 (345-454)||(41182303-41182410)
chr3 (345-412)||(47647321-47647388)
chr3 (349-454)||(39586978-39587081)
chr3 (359-412)||(227778-227830)
chr3 (213-293)||(3733176-3733257)
chr3 (359-412)||(6936844-6936896)
chr3 (368-412)||(10508884-10508928)
chr3 (368-412)||(47013430-47013474)
chr3 (348-492)||(1477306-1477454)
chr3 (363-411)||(1637449-1637498)
chr3 (368-412)||(49165760-49165804)
[»] scaffold0048 (3 HSPs)
scaffold0048 (59-307)||(86435-86686)
scaffold0048 (59-296)||(57645-57885)
scaffold0048 (376-500)||(57980-58104)
[»] chr4 (32 HSPs)
chr4 (135-293)||(39806697-39806855)
chr4 (133-293)||(23186413-23186572)
chr4 (381-503)||(49606694-49606819)
chr4 (343-408)||(49527176-49527242)
chr4 (345-454)||(2013343-2013450)
chr4 (345-454)||(35319506-35319613)
chr4 (345-456)||(16452353-16452462)
chr4 (345-412)||(16024268-16024335)
chr4 (345-412)||(38217943-38218010)
chr4 (345-412)||(43841573-43841640)
chr4 (345-454)||(168149-168256)
chr4 (59-150)||(12692329-12692419)
chr4 (359-453)||(15542460-15542551)
chr4 (345-454)||(28780400-28780507)
chr4 (345-454)||(31093509-31093616)
chr4 (368-454)||(33281511-33281595)
chr4 (345-454)||(35159123-35159230)
chr4 (441-498)||(8909793-8909850)
chr4 (359-454)||(4189521-4189613)
chr4 (345-412)||(6963877-6963944)
chr4 (345-412)||(49374718-49374785)
chr4 (339-382)||(20754436-20754479)
chr4 (345-454)||(45924994-45925101)
chr4 (368-410)||(52416603-52416645)
chr4 (345-454)||(55137064-55137171)
chr4 (344-405)||(1355762-1355822)
chr4 (368-456)||(38550899-38550985)
chr4 (359-411)||(9035768-9035819)
chr4 (349-454)||(16740779-16740880)
chr4 (59-103)||(23186339-23186383)
chr4 (359-454)||(40728446-40728538)
chr4 (375-454)||(45229501-45229578)
[»] scaffold0001 (2 HSPs)
scaffold0001 (236-307)||(424229-424300)
scaffold0001 (139-224)||(425529-425615)
[»] scaffold0018 (1 HSPs)
scaffold0018 (340-503)||(181372-181529)
[»] scaffold0512 (1 HSPs)
scaffold0512 (352-500)||(11565-11708)
[»] scaffold0210 (1 HSPs)
scaffold0210 (214-306)||(6477-6568)
[»] scaffold0500 (1 HSPs)
scaffold0500 (339-408)||(1337-1406)
[»] scaffold0054 (2 HSPs)
scaffold0054 (425-498)||(17011-17084)
scaffold0054 (247-303)||(17207-17263)
[»] scaffold0012 (1 HSPs)
scaffold0012 (364-500)||(245888-246020)
[»] scaffold0064 (1 HSPs)
scaffold0064 (213-259)||(61218-61264)
[»] scaffold0027 (1 HSPs)
scaffold0027 (363-408)||(38025-38070)
[»] scaffold0127 (1 HSPs)
scaffold0127 (215-303)||(36459-36547)
[»] scaffold0121 (1 HSPs)
scaffold0121 (345-412)||(47099-47166)


Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 37126395 - 37125848
Alignment:
Q  18 cacagaaactgtcagtgcaaagtggacaacaacnnnnnnnttcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttc 117  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37126395 cacagaaactgtcagtgcaaagtggacaacaa-aaaaaaattcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttc 37126297  T
Q  118 tctcatttttcaccaagtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttg 217  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37126296 tctcatttt-cacccagtatcgaataaattcggattatatcatccgaaaaccatgggcaggaattcatattatataatccaaaccaagtcaatgtttttg 37126198  T
Q  218 gccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgacatgcattacg 317  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  37126197 gccggtagtctgcaccacatagaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgacctgcattatg 37126098  T
Q  318 gggagttacgctatatgcaaccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctctt---ctct 414  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||   ||||    
T  37126097 gggagttacgctctatgcaaccattccccctataaataccctccaaaccttcaccatttctcacaccatcgtctcacattctctccccctcttctcctct 37125998  T
Q  415 ttcttctacaacaatgtgtttctatagttggtctttcataaaaataggc----tactttggaaacacagggattgtatgaaccgtcaatgagggatggca 510  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |    ||||||||||||||||||||||||||||| |||||||  ||||||||    
T  37125997 ttcttttacaacaatgtgtttcaatagttggtctttcataaaaatagactacgtactttggaaacacagggattgtatgaacggtcaatggaggatggca 37125898  T
Q  511 cggtttatctgggtgtcatgttgatttgtc-tggtgcaatgagtacttag 559  Q
    || ||| |||||||||||| ||||||||||  ||||||||||||||||||    
T  37125897 cgatttgtctgggtgtcatattgatttgtcagggtgcaatgagtacttag 37125848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 112 - 498
Target Start/End: Original strand, 33946621 - 33946995
Alignment:
Q  112 agtttctctcatttttcaccaagtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatg 211  Q
    ||||||||||||||| ||||   |||| |||||| || |||||||| ||| |||||||||| | | || |||| |||||||||||  ||||||  |  |     
T  33946621 agtttctctcatttt-cacccgatatcaaataaattctgattatataatctgaaaaccatgtgtaagagttcaaattatataatctgaaccaaaccttt- 33946718  T
Q  212 tttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac-atg 310  Q
    ||||||||||||||| | |||||||||||||| ||||||||| |||||| ||| |||||||||| |||||| ||| |||||||||  |||||||||        
T  33946719 tttttggccggtggtttacaccacataaaacatgttttcaaatgttttttccaacattaatggttggtaaagcccatttgaaacacattttttgactcaa 33946818  T
Q  311 cattacggggagttacgctatatgcaaccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctctt 410  Q
    ||||| | | |||||| || ||||| || ||| |||||||||||| ||| ||||||| || ||||||||||||     ||||       ||||||  |||    
T  33946819 cattaagtgtagttacactctatgc-acaatttcccctataaatagccttcaaaccttcatcatttctcacac-----tctc-----tgctcctctcctt 33946907  T
Q  411 ctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaa 498  Q
    || |||||||||||| |||||||| | || ||||| |||||||| ||||||||||||||| |||  ||| |||||||||||| |||||    
T  33946908 ctttttcttctacaataatgtgttcccatcgttggcctttcatagaaataggctactttgaaaattcagtgattgtatgaacggtcaa 33946995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 199 - 403
Target Start/End: Complemental strand, 25630240 - 25630036
Alignment:
Q  199 aaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaag 298  Q
    |||||||||| | ||||||| |  || |||||||||||||||||||||||||||| |||||||| |||| ||||||  ||||||||| |||||||||| |    
T  25630240 aaccaagtcagtttttttggacaatgttctgcaccacataaaacacgttttcaaaagtttttactagcaataatggctggtaaaacctctttgaaacacg 25630141  T
Q  299 ttttttgac-atgcattacggggagttacgctatatgcaaccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacact 397  Q
    |||||| ||    ||||| ||| ||||||    |||||| |||||    |||||||||| || | ||||| ||||||||||||||| ||| |||||||||    
T  25630140 tttttttactcaccattatgggtagttacaacctatgcacccatt-ttgctataaatactcttccaaccttcaccatttctcacacgatcatctcacact 25630042  T
Q  398 ctctcc 403  Q
    ||||||    
T  25630041 ctctcc 25630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 463
Target Start/End: Original strand, 32980633 - 32980759
Alignment:
Q  331 tatgcaaccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatg 430  Q
    |||| |||||| ||||||||||||| ||| | || || ||||||||||||||| | | |||||||| ||||||||||||||     ||||||||||||||    
T  32980633 tatgtaaccatcccccctataaatatccttccaaacttcaccatttctcacacaa-catctcacaccctctcctcctcttc-----cttctacaacaatg 32980726  T
Q  431 tgtttctatagttggtctttcataaaaataggc 463  Q
    | |||| || |||||||||||||| ||| ||||    
T  32980727 tttttccatcgttggtctttcatagaaagaggc 32980759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 38208757 - 38208841
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||||||||||||||| |||| |||||||||||||||  ||||| |||||||||| |||  |||| || ||||||||||||||    
T  38208757 ccaccatttctcacaccatcctctcccactctctcctcctc--ctcttccttctacaaccatggttttccatcgttggtctttcata 38208841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 21483449 - 21483370
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||| || |||||||||  | |||||||| ||||||    
T  21483449 ttttggacggtggtctgcaccacaagaaacacgttttcaaaggttttta-caacattaatggctgttaaaacccatttgaa 21483370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 17137437 - 17137330
Alignment:
Q  345 ccctataaataccc-tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| || |||||||||  |||| |||||||||| |||  |||| || |||    
T  17137437 ccctataaatagccgtccaaacc-ccaccatttctcacaccatcctctcccaccctatcctcctct--tcttccttctacaaccatggttttccatcgtt 17137341  T
Q  444 ggtctttcata 454  Q
    |||||||||||    
T  17137340 ggtctttcata 17137330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 18880216 - 18880132
Alignment:
Q  342 tccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaa 428  Q
    |||||||||||||||||| | ||| | || |||||||||||||||| || |||| ||||||||||||  ||||| ||||||||||||    
T  18880216 tccccctataaatacccttccaacattcatcatttctcacaccatcatcccacattctctcctcctc--ctcttccttctacaacaa 18880132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 28272355 - 28272415
Alignment:
Q  344 cccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcct 404  Q
    |||||||||||||||| | ||||| ||| ||||||||||||||| | ||||||||||||||    
T  28272355 cccctataaatacccttccaaccttcactatttctcacaccatcatttcacactctctcct 28272415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 31715721 - 31715677
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtt 257  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  31715721 ttttggccggtggtctgcaccacatagaaaacgttttcaaaggtt 31715677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 38703320 - 38703253
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  38703320 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 38703253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 15912113 - 15912220
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| ||||||||  ||| |||| |||||||||| |||  |||| || |||    
T  15912113 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctc--cttttcttccttctacaaccatggttttccatcgtt 15912209  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  15912210 ggcctttcata 15912220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 454
Target Start/End: Original strand, 17309364 - 17309470
Alignment:
Q  346 cctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    |||||||||| ||| ||||||| | |||||||||||||||||| |||| ||| ||||| ||||||  |||| |||||||||| |||  |||| || ||||    
T  17309364 cctataaatagccttccaaacc-ctaccatttctcacaccatcctctcccaccctctcatcctct--tcttccttctacaaccatggttttccatcgttg 17309460  T
Q  445 gtctttcata 454  Q
    ||||||||||    
T  17309461 gtctttcata 17309470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 6404532 - 6404584
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||| ||||||||||||||| |||| |||||||||||||||||||    
T  6404532 tccaaacc-ccactatttctcacaccatcctctcccactctctcctcctcttct 6404584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 338 - 411
Target Start/End: Complemental strand, 14913285 - 14913212
Alignment:
Q  338 ccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttc 411  Q
    |||||||| |||||| || ||| | ||||| || |||||| ||||||||| ||| |||||||||||||||||||    
T  14913285 ccattcccgctataagtatccttccaaccttcaacatttcccacaccatcatctgacactctctcctcctcttc 14913212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 26616287 - 26616351
Alignment:
Q  339 cattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcct 404  Q
    ||||||||||||||||||| ||| ||||| |||||||| |||||||||| ||||||| ||| ||||    
T  26616287 cattccccctataaataccttcc-aaccttcaccatttttcacaccatcatctcacattctttcct 26616351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 454
Target Start/End: Complemental strand, 7941265 - 7941156
Alignment:
Q  343 ccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagt 442  Q
    ||||||||||||| | | | || |||||||| ||||||||||||| |||| ||| ||||| ||||||  |||| |||||||||| |||  |||| || ||    
T  7941265 ccccctataaatagcattccaaactccaccacttctcacaccatcctctcccaccctctcatcctct--tcttccttctacaaccatggttttccatcgt 7941168  T
Q  443 tggtctttcata 454  Q
    ||| ||||||||    
T  7941167 tggcctttcata 7941156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 31715556 - 31715492
Alignment:
Q  399 tctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggc 463  Q
    ||||||| ||| ||||| |||||||||| |||||||||||| ||||| |||||||| ||| ||||    
T  31715556 tctcctcttctcctcttccttctacaacgatgtgtttctatcgttggcctttcatagaaagaggc 31715492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 44760464 - 44760556
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||| ||||||||||||||| |||| |||| ||| |||||||| |||  |||| |||||||||| |||  |||| || ||||||||||||||    
T  44760464 tccaaacc-ccaccatttctcacatcatcctctcccaccctctcctcgtct--tcttccttctacaaccatggttttccatcgttggtctttcata 44760556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 45117477 - 45117544
Alignment:
Q  345 ccctataaat-accctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||| ||| |||||||| |||||||||||||||||||| |||| ||| |||| ||||||||||    
T  45117477 ccctataaataaccttccaaacc-ccaccatttctcacaccatcctctcccaccctcttctcctcttct 45117544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 454
Target Start/End: Complemental strand, 1209625 - 1209543
Alignment:
Q  370 accatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||||||||||||| |||| ||| || |||||||||  |||| |||||||||| |||  |||| || ||||| ||||||||    
T  1209625 accatttctcacaccatcctctcccaccctatcctcctct--tcttccttctacaaccatggttttccatcgttggcctttcata 1209543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 18965403 - 18965495
Alignment:
Q  402 cctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaaca--cagggattgtatgaac 492  Q
    |||| ||| ||||| |||||||||| ||||||||| || |||||| ||||||| ||| ||||  |||||||||    ||||||||||||||||    
T  18965403 cctcttctcctcttccttctacaaccatgtgtttccatcgttggtttttcatagaaagaggcctctttggaaattttcagggattgtatgaac 18965495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 45234646 - 45234698
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||| ||||    
T  45234646 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctccttttct 45234698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 5462431 - 5462375
Alignment:
Q  419 tctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaac 475  Q
    |||||||||||||||||| || |||||||||||||| | | ||||  ||||||||||    
T  5462431 tctacaacaatgtgtttccatcgttggtctttcatacatagaggcatctttggaaac 5462375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 43334154 - 43334198
Alignment:
Q  419 tctacaacaatgtgtttctatagttggtctttcataaaaataggc 463  Q
    ||||||||||||||||||||| ||||| |||||||| ||| ||||    
T  43334154 tctacaacaatgtgtttctatcgttggcctttcatagaaagaggc 43334198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 4e-70; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 108 - 500
Target Start/End: Original strand, 19630220 - 19630615
Alignment:
Q  108 acgtagtttctctcatttttcaccaagtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtc 207  Q
    |||||||||  || ||||||| || |||||| |||||| ||| ||||||| ||||||||| |||||| | |||||   |||||||||||  |||||||||    
T  19630220 acgtagttttccttatttttctcccagtatcaaataaattcgcattatataatccgaaaatcatgggtatgaatttggattatataatctgaaccaagtc 19630319  T
Q  208 aatgtttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||    
T  19630320 agtgtttttggccggtggtctgcaccgcataaaacacgttgtcaaaggtttttaccagcattaatggttgg-aaaacccctttgaaacatgttttttgac 19630418  T
Q  308 -atgcattacggggagttacgctatatgcaaccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctc---c 403  Q
        ||||| | | || |||  | ||||||   |||   ||||||||||  |  ||||||| ||||||||||||||||||| ||||||||||||||   |    
T  19630419 tcaacattaagtgtagctacattctatgcacaaatttttcctataaatagtcatcaaaccttcaccatttctcacaccatcatctcacactctctcccac 19630518  T
Q  404 tcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaatg 500  Q
    ||  || ||||| |||||||||||||||||||  || ||||  |||||||||||||| |||||||||| ||| ||||||| |||||||| |||||||    
T  19630519 tctcctcctcttccttctacaacaatgtgttttcatcgttgacctttcataaaaatatgctactttgggaactcagggatcgtatgaactgtcaatg 19630615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 133 - 286
Target Start/End: Original strand, 17521516 - 17521667
Alignment:
Q  133 agtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcac 232  Q
    ||||||||||||| |  ||||| || |||||||||||||||| | || |||| ||||||||| ||||||||||||| | || |||||  ||||| |||||    
T  17521516 agtatcgaataaatttagattagataatccgaaaaccatgggtaagatttcagattatataacccaaaccaagtcagt-ttcttggcttgtggtttgcac 17521614  T
Q  233 cacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaaccc 286  Q
    ||||| |||||||||||||||||||||||||||||||| |||  ||||||||||    
T  17521615 cacat-aaacacgttttcaaaggtttttaccagcattattggctggtaaaaccc 17521667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 133 - 350
Target Start/End: Original strand, 25180462 - 25180677
Alignment:
Q  133 agtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcac 232  Q
    |||||||| |||| |||||||| || || || |||||||| || ||| |||  |||||||||||||||   ||| | | | ||||| |||||||||||||    
T  25180462 agtatcgattaaattcggattacataattcggaaaccatgtga-ggatttcgaattatataatccaaaaatagttagtttctttggtcggtggtctgcac 25180560  T
Q  233 cacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgacatgcattacggggagttacgctata 332  Q
    ||||   ||||||||||||||||||||||| |||||||||||| || ||||||| |||| |||| ||||||||||   ||| | |||||||||| || ||    
T  25180561 cacaagcaacacgttttcaaaggtttttactagcattaatggttggcaaaacccttttg-aacacgttttttgaccaacataatggggagttacactcta 25180659  T
Q  333 tgcaaccattccccctat 350  Q
    ||||||||||| ||||||    
T  25180660 tgcaaccattctccctat 25180677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 12801647 - 12801565
Alignment:
Q  223 tggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||    
T  12801647 tggtctgcaccacaaacaacacgttt-caaaggtttttaccagcattaatggctggtaaaacccctttg-aacacgttttttgac 12801565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 12801891 - 12801821
Alignment:
Q  223 tggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  12801891 tggtctgtaccacaaacaacacgttttcaaaggtttttaccagcattaatggctggtaaaatccctttgaa 12801821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 17523029 - 17523094
Alignment:
Q  417 cttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacaggga 482  Q
    |||||||||||||| |||||||| |||||||||||||||||| || ||||| ||||||| ||||||    
T  17523029 cttctacaacaatgggtttctatcgttggtctttcataaaaacagtctactatggaaactcaggga 17523094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 31271751 - 31271859
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| ||||||||||||||| |||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  31271751 ccctataaatagccttccaaacccccaccatttctcacatcatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 31271848  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  31271849 ggcctttcata 31271859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 304159 - 304226
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  304159 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 304226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 16395723 - 16395790
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| | || | |||||||||||||||||||| |||| ||| |||||||||||||||    
T  16395723 ccctataaatagccttccaaacgccaccatttctcacaccatcctctcccaccctctcctcctcttct 16395790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 6662916 - 6662840
Alignment:
Q  352 aataccctccaaacctccaccattt-ctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaa 428  Q
    |||||||||| ||||| |||||||| ||||||||||| ||||||| |||||||||| |  ||||| ||||||||||||    
T  6662916 aataccctcccaaccttcaccattttctcacaccatcatctcacattctctcctcc-cccctcttccttctacaacaa 6662840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 31318921 - 31318988
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| |||| ||||||||||||||| |||| ||| |||||||||||||||    
T  31318921 ccctataaatagccttccaaacc-ccacaatttctcacaccatcctctcccaccctctcctcctcttct 31318988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 9304690 - 9304583
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| ||||| |||||||||||||| |||| ||| ||||||||||||   ||| |||||||||| |||  |||  || |||    
T  9304690 ccctataaataaccttccaaacc-ccaccttttctcacaccatcctctcccaccctctcctcctct--ccttccttctacaaccatggtttttcatcgtt 9304594  T
Q  444 ggtctttcata 454  Q
    |||||||||||    
T  9304593 ggtctttcata 9304583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 500
Target Start/End: Complemental strand, 20386141 - 20386052
Alignment:
Q  411 ctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaatg 500  Q
    ||||| |||||||||||||||||||  ||  |||  |||||||||||| || |||||||| |||  |||| ||||||| ||| |||||||    
T  20386141 ctcttccttctacaacaatgtgttttcatcattgacctttcataaaaagagactactttgaaaattcaggaattgtataaacggtcaatg 20386052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 11975411 - 11975455
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||| ||||||||    
T  11975411 ccaccatttctcacaccatcctctcccaccctctccacctcttct 11975455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 74 - 499
Target Start/End: Original strand, 28286029 - 28286456
Alignment:
Q  74 tataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatcatccgaaaaccatgg 173  Q
    ||||||||||||||||||||  || ||||| | ||||  ||||| |||||||| |||| ||||||||||||| || |||| ||| |||||||||||||||    
T  28286029 tataatctgaaatgtccctcacccaacataaggcacgatgtttccctcatttt-cacccagtatcgaataaattcagattctataatccgaaaaccatgg 28286127  T
Q  174 gaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatg 273  Q
    | | || ||   |||||||||||| |||||||| | | || ||| |||||  ||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  28286128 gcatgattttggattatataatccgaaccaagtaagt-ttcttgcccggtattctgcaccacataaaacacattttcaaaagtttttaccaacattaatg 28286226  T
Q  274 gtcggtaaaacccctttgaaacaagttttttgac-atgcattacggggagttacgctatatgcaaccattccccctataaataccctccaaacctccacc 372  Q
        |||||||||| |||||||||||||||||||    ||||| | | |||||| || ||||||    ||   ||||||||||  || ||||| | ||||    
T  28286227 acttgtaaaaccccattgaaacaagttttttgactcaacattaagtgtagttacactctatgcacaattttttcctataaatagtcttcaaactttcacc 28286326  T
Q  373 atttctcacaccatcgtctcacactctctcctc--ctctt-ctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctacttt 469  Q
    |||||||||||| || |||||||||||||||||  ||||| ||||| |||||||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  28286327 atttctcacaccgtcatctcacactctctcctcttctcttcctcttccttctacaacaatgtgattccatcgttggtctttcataaaaagaggctacttt 28286426  T
Q  470 ggaaacacagggattgtatgaaccgtcaat 499  Q
    ||||||  ||||||||||||||| ||||||    
T  28286427 ggaaacttagggattgtatgaacggtcaat 28286456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 4258465 - 4258385
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||    
T  4258465 ttttggccggtggtctgcaccacaagaaacatgttttcaaaggtttttaccagcattaatggttgataaaactcctttgaa 4258385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 344 - 503
Target Start/End: Complemental strand, 16795561 - 16795411
Alignment:
Q  344 cccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    |||||||||||||||| |||| || ||||| |||||| |||||| |||||||| |||||||||||      ||||| ||||||||| | |||| |   ||    
T  16795561 cccctataaatacccttcaaatcttcaccagttctcaaaccatcatctcacacactctcctcctc------ttcttttacaacaatatttttcca---tt 16795471  T
Q  444 ggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaatgagg 503  Q
    || |||||||||||| |||||||||| ||||   ||||||||||||||| ||||||||||    
T  16795470 ggcctttcataaaaaaaggctacttttgaaatttagggattgtatgaacggtcaatgagg 16795411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 470
Target Start/End: Complemental strand, 19329685 - 19329560
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||| | ||||||||||||| || ||||||||||| |||| ||||||||||| ||||    || | || |||||||||||| || ||||||| ||||    
T  19329685 ccctatagacaccctccaaaccttcatcatttctcacatcatcatctcacactctttcctttattttttttccttctacaacaacgtctttctatcgttg 19329586  T
Q  445 gtctttcataaaaataggctactttg 470  Q
    |||||||| ||||| || ||||||||    
T  19329585 gtctttcacaaaaagagactactttg 19329560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 24734000 - 24733861
Alignment:
Q  346 cctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttgg 445  Q
    |||||||||||||| |||  || ||  ||||||||||||||| ||| ||||||||       |||||||| ||||||||||||||| |||| || || ||    
T  24734000 cctataaatacccttcaattcttcataatttctcacaccatcatcttacactctc-------cttctcttccttctacaacaatgtatttccatcgtcgg 24733908  T
Q  446 tctttcataaaaataggctactttggaaacacagggattgtatgaac 492  Q
    ||||||||| ||| || |||||||| |||  ||||||||||||||||    
T  24733907 tctttcatacaaaaagactactttgaaaattcagggattgtatgaac 24733861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 5459861 - 5459796
Alignment:
Q  343 ccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctc 408  Q
    |||||| |||||||||| | ||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  5459861 ccccctgtaaatacccttccaaccttcaccatttctcacaccatcatctcacattctctcctcctc 5459796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 32338259 - 32338343
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||  ||||||||||||||| |||  |||| || ||||||||||||||    
T  32338259 ccaccatttctcacatcatcctctcccaccctctcctcctct--tctttcttctacaaccatggttttccatcgttggtctttcata 32338343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 39318330 - 39318248
Alignment:
Q  346 cctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatg 430  Q
    |||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||||||||||||  |||| ||||||||||||||    
T  39318330 cctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaacaatg 39318248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 40104984 - 40104877
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| |||||||||||||||| ||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  40104984 ccctataaatagccttccaaacc-ccaccatttctcacactatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 40104888  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  40104887 ggcctttcata 40104877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 492
Target Start/End: Original strand, 14194752 - 14194899
Alignment:
Q  345 ccctataaataccctccaaacctccac----catttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctata 440  Q
    ||||||||||||||| ||||||| |||     |||||| ||| |||| ||||||||| ||||||||||    ||| |||||||||||||||||||| ||     
T  14194752 ccctataaatacccttcaaaccttcacaattaatttcttacaacatcatctcacactttctcctcctc----cttccttctacaacaatgtgtttccatc 14194847  T
Q  441 gttggtctttcataaaaataggctactttggaaacacagggattgtatgaac 492  Q
     | |  |||| | ||||| ||| |||||||||||  || |||||||||||||    
T  14194848 atcgaccttttagaaaaagaggttactttggaaattcaaggattgtatgaac 14194899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 6347715 - 6347782
Alignment:
Q  345 ccctataaat-accctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||| ||| |||||||| |||| ||||||||||||||| |||| ||| |||||||||||||||    
T  6347715 ccctataaataaccttccaaacc-ccacaatttctcacaccatcctctctcaccctctcctcctcttct 6347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 11076633 - 11076700
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || ||||||||| |||||||| |||||||||| |||| ||| |||||||||||||||    
T  11076633 ccctataaatagccttccaaacct-caccatttttcacaccatcctctcccaccctctcctcctcttct 11076700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 32947428 - 32947495
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| ||||||||| |||||||||| |||| ||| |||||||||||||||    
T  32947428 ccctataaatagccttccaaacc-ccaccatttatcacaccatcctctcccaccctctcctcctcttct 32947495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 43098246 - 43098194
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||| ||||||    
T  43098246 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcatcttct 43098194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 37098735 - 37098802
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||  ||| |||||||||||    
T  37098735 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccagcctcccctcctcttct 37098802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 150 - 492
Target Start/End: Complemental strand, 15812007 - 15811664
Alignment:
Q  150 gattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgtttt 249  Q
    |||||||| |||||||||||||||| | || |||| ||||||||||   |||||||||| | || ||||||||||||||| ||||||||||||| |||||    
T  15812007 gattatataatccgaaaaccatgggtatgatttcagattatataatttgaaccaagtcagt-ttcttggccggtggtctgaaccacataaaacatgtttt 15811909  T
Q  250 caaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgacatg-cattacggggagttacgctatatgcaaccattccccct 348  Q
    |||||||||||| ||||||| ||||  ||||||||||||||||| ||  |||||| ||    ||||| | | || ||| || ||||||||||||||||||    
T  15811908 caaaggtttttatcagcattgatgggtggtaaaacccctttgaaccatatttttttactcaacattaagtgtagatacactctatgcaaccattccccct 15811809  T
Q  349 ataaataccctccaaacctccaccatttctcacaccatcgtctcacactctc-tcctcctcttctctttcttctacaacaatgtgtttctatagttggtc 447  Q
    ||||||| | | ||||||| ||||||||||||||||||| |||||||||||| |||||  ||  |||| ||| |||||||||||||||| || |||||      
T  15811808 ataaatagcgttcaaaccttcaccatttctcacaccatcatctcacactctcatcctctcctcatcttccttatacaacaatgtgtttccatcgttggca 15811709  T
Q  448 tttcataaaaataggctactttggaaacacagggattgtatgaac 492  Q
    ||||||||||| | |||||||||||||| || |||||||||||||    
T  15811708 tttcataaaaagatgctactttggaaactcaaggattgtatgaac 15811664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 150 - 492
Target Start/End: Complemental strand, 15728354 - 15728010
Alignment:
Q  150 gattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgtttt 249  Q
    |||||||| |||||||||||||||| | || |||| ||||||||||   |||||||| | | || ||||||||||||||| |||||||||||||| ||||    
T  15728354 gattatataatccgaaaaccatgggtatgatttcagattatataatttgaaccaagtgagt-ttcttggccggtggtctgaaccacataaaacacatttt 15728256  T
Q  250 caaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaag-ttttttgac-atgcattacggggagttacgctatatgcaaccatt-cccc 346  Q
    |||||||||||||||||||||||||  ||||||||||||||||| || | |||||||||    ||||| | | || ||| ||||||||||||||| ||||    
T  15728255 caaaggtttttaccagcattaatgggtggtaaaacccctttgaaccacgtttttttgactcaacattaagtgtagatacactatatgcaaccattccccc 15728156  T
Q  347 ctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctc-tcctcctcttc-tctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||||| | |  |||||| ||||||||||||||||||| |||||||||||| ||||| || || |||| ||| |||||||||||||| | || ||||    
T  15728155 ctataaataacgtataaaccttcaccatttctcacaccatcatctcacactctcatcctcttcctcatcttccttatacaacaatgtgttcccatcgttg 15728056  T
Q  445 gtctttcataaaaataggctactttggaaacacagggattgtatgaac 492  Q
    |  ||||||||||| | ||||||||||  || || |||||||||||||    
T  15728055 gcatttcataaaaagatgctactttgg--actcaaggattgtatgaac 15728010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 69 - 260
Target Start/End: Complemental strand, 23342571 - 23342380
Alignment:
Q  69 gattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatcatccgaaaac 168  Q
    |||||||||||||||||||||||||  |||||||| |  |||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| | ||||    
T  23342571 gattatataatctgaaatgtccctcatcctacataaggtacgtagtttctctcatttttcacc-agtattgaataaattcggattatataatctggaaac 23342473  T
Q  169 catgggaaggaattcatattatataatccaaaccaagtcaatg-tttttggccggtggtctgcaccacataaaacacgttttcaaaggttttt 260  Q
    |||||| ||| |||   |||||||||||  || || |||| || ||||||| || ||||  ||||||||||||||||||||||||| ||||||    
T  23342472 catgggtagggatttggattatataatctgaagcacgtcagtgttttttggtcgatggtaagcaccacataaaacacgttttcaaatgttttt 23342380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 23251365 - 23251538
Alignment:
Q  133 agtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgt-ttttggccggtggtctgca 231  Q
    ||||||| |||||||||||||| || ||||| ||||||||||  ||  |||  |||||||||||| ||| |||||||| | ||||||  |||||||||||    
T  23251365 agtatcgtataaactcggattacataatccggaaaccatgggt-ggttttccgattatataatccgaactaagtcaatttattttggatggtggtctgca 23251463  T
Q  232 ccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    |||||  |||||||||||||| ||||||||||| ||| |||||   |||||||||||||| |||| ||||||||||    
T  23251464 ccacaagaaacacgttttcaacggtttttaccaacatcaatggctagtaaaacccctttg-aacacgttttttgac 23251538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 15777508 - 15777580
Alignment:
Q  339 cattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttc 411  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  15777508 cattccccctataaatacccttccaaccttcaccatttctcacaccatcatctcacactctctcctcctcttc 15777580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 17978286 - 17978206
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  17978286 ttttggccggtggtctgcaccacaagaaacatgttttcaaaggtttttaccagcaataatggttggtaaaactcctttgaa 17978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 27496949 - 27497037
Alignment:
Q  215 ttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttt 303  Q
    |||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||    
T  27496949 ttggacggtggtttgcaccacaagaaacacgttttcaaaggtttttaccagcattaatggctggtaaaactcctttgaaacatgttttt 27497037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 497
Target Start/End: Complemental strand, 27688439 - 27688290
Alignment:
Q  344 cccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttct-atagt 442  Q
    |||||||||||||| | ||||| | |||||||||| |||||||  |||||||||||||||||||||||     ||||||||||||| | ||| | || ||    
T  27688439 cccctataaatacctttcaaacattcaccatttctaacaccattatctcacactctctcctcctcttc-----cttctacaacaatttttttttcatcgt 27688345  T
Q  443 tggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtca 497  Q
    ||| ||||||||  ||||||||||||||||||  || ||||||||||||| ||||    
T  27688344 tggcctttcataggaataggctactttggaaattcatggattgtatgaacggtca 27688290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 22909635 - 22909551
Alignment:
Q  212 tttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaaca 296  Q
    ||||||| |||| |||||||||| |  |||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  22909635 tttttggacggttgtctgcaccataagaaacacattttcaaaggtttttaccagcattaatggctggtaaaactcctttgaaaca 22909551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 454
Target Start/End: Original strand, 37013233 - 37013336
Alignment:
Q  349 ataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtct 448  Q
    ||||||| ||||| || |||||||||||||||||||||| |||| ||| ||||| ||||||  ||||||||||||||| |||  |||| || ||||||||    
T  37013233 ataaatagcctcccaaactccaccatttctcacaccatcttctcccaccctctcttcctct--tctttcttctacaaccatggttttccatcgttggtct 37013330  T
Q  449 ttcata 454  Q
    ||||||    
T  37013331 ttcata 37013336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 500
Target Start/End: Original strand, 27950499 - 27950650
Alignment:
Q  346 cctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttgg 445  Q
    |||||||||||  |||||  |||||||||||||||||| | | |||| ||| ||||||||||||||     |||||||||| ||||||||| || ||| |    
T  27950499 cctataaatactatccaattctccaccatttctcacacaaacatctcccaccctctcctcctcttc-----cttctacaaccatgtgtttccatcgttag 27950593  T
Q  446 tctttcataaaaataggctactttggaaa--cacagggattgtatgaaccgtcaatg 500  Q
     |||||||||||| ||||  |||||||||    |||||||||||||||| |||||||    
T  27950594 cctttcataaaaagaggcctctttggaaattttcagggattgtatgaacagtcaatg 27950650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 474
Target Start/End: Original strand, 28444190 - 28444311
Alignment:
Q  348 tataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtc 447  Q
    |||||||||||| ||||||| |||||||||||||| |||| |||||||| || || ||||||||     |||||| || ||| | |||  || |||||||    
T  28444190 tataaatacccttcaaaccttcaccatttctcacatcatcatctcacaccctatcttcctcttc-----cttctataataatatattttcatcgttggtc 28444284  T
Q  448 tttcataaaaataggctactttggaaa 474  Q
    ||||||||||| | |||||||||||||    
T  28444285 tttcataaaaagatgctactttggaaa 28444311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 38679197 - 38679090
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||||||| ||||  |||| |||||||||| |||  |||| || |||    
T  38679197 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctccttctct--tcttccttctacaaccatgattttccatcgtt 38679101  T
Q  444 ggtctttcata 454  Q
    |||||||||||    
T  38679100 ggtctttcata 38679090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 500
Target Start/End: Complemental strand, 22415739 - 22415616
Alignment:
Q  373 atttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttgga 472  Q
    ||||||||  ||||| | |||||||||||||||||    ||||| ||||||||||||||||||| || |||||||||||||| ||| |||  ||| | ||    
T  22415739 atttctcatcccatcatgtcacactctctcctcct----tctttattctacaacaatgtgtttccattgttggtctttcatacaaaaaggaaactctaga 22415644  T
Q  473 aacacagggattgtatgaaccgtcaatg 500  Q
    |   |||||||||||||||  |||||||    
T  22415643 atttcagggattgtatgaatggtcaatg 22415616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 26279458 - 26279565
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||||||| ||| | || | |||||||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || ||||    
T  26279458 ccctataaatagccttctaaaccccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgttg 26279555  T
Q  445 gtctttcata 454  Q
    | ||||||||    
T  26279556 gcctttcata 26279565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 23227379 - 23227450
Alignment:
Q  339 cattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttc 411  Q
    ||||||||||||||||||||| | | ||| ||||||||||||||||||| ||||||| | |||| ||||||||    
T  23227379 cattccccctataaatacccttcca-ccttcaccatttctcacaccatcatctcacattttctcatcctcttc 23227450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 16513324 - 16513217
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  16513324 ccctataaatagccttccaaacc-ccacaatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaactatggttttccatcgtt 16513228  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  16513227 ggcctttcata 16513217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 492
Target Start/End: Complemental strand, 22909419 - 22909352
Alignment:
Q  425 acaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtatgaac 492  Q
    ||||| |||||| || |||||  ||||||||||||||||||||||| |||| |||||||| |||||||    
T  22909419 acaatttgtttccatcgttggcttttcataaaaataggctactttgaaaactcagggattatatgaac 22909352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 23342215 - 23342153
Alignment:
Q  447 ctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaatgagggatggca 510  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||| ||||||| |||||||||    
T  23342215 ctttcataaaaagaggctgctttggaaactcagggatcgtatgaacggtcaatg-gggatggca 23342153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 8735097 - 8735204
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||||||| ||| | ||  ||||||||||||||||||||| |||| ||| ||||||| ||||  |||| |||||||||| |||  |||| || ||||    
T  8735097 ccctataaatagccttccaaagtccaccatttctcacaccatcctctcccaccctctccttctct--tcttccttctacaaccatggttttccattgttg 8735194  T
Q  445 gtctttcata 454  Q
    | ||||||||    
T  8735195 gcctttcata 8735204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 463
Target Start/End: Complemental strand, 27347183 - 27347070
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||||||||| || ||  |||||||||||||||||| | | |||| ||| ||||||||||||||     |||||||||| ||||||||| || ||||    
T  27347183 ccctataaataccatctaagtctccaccatttctcacacaaacatctcccaccctctcctcctcttc-----cttctacaaccatgtgtttccatcgttg 27347089  T
Q  445 gtctttcataaaaataggc 463  Q
      |||||||| ||| ||||    
T  27347088 acctttcatagaaagaggc 27347070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 498
Target Start/End: Original strand, 27497081 - 27497223
Alignment:
Q  347 ctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctaca-acaatgtgtttctatagttgg 445  Q
    ||||||||| ||||||||  |||||||||||||||||||||      ||| |||||||||||||     |||||||   |||||||||||| || || |     
T  27497081 ctataaatagcctccaaaattccaccatttctcacaccatcc-----caccctctcctcctctt-----tcttctatgcacaatgtgtttccatcgtcgc 27497170  T
Q  446 tctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaa 498  Q
     |||||||||||| |||||||||||||||  || ||||| ||||||| |||||    
T  27497171 cctttcataaaaagaggctactttggaaattcaaggattatatgaacggtcaa 27497223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 36310591 - 36310662
Alignment:
Q  337 accattccccctataaata-ccctccaaacctccaccattt-ctcacaccatcgtctcacactctctcctcct 407  Q
    ||||||||||||||||||| |||||||| ||| |||||||| ||||||||||| ||||| | |||||||||||    
T  36310591 accattccccctataaatatccctccaa-ccttcaccattttctcacaccatcatctcatattctctcctcct 36310662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 37030032 - 37029965
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||||| |||||||||    
T  37030032 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcatcctcttct 37029965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 37883846 - 37883913
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| ||||||||||||||| |||| |||| ||| |||||||||||||||    
T  37883846 ccctataaatatccttccaaacc-ccaccatttctcacatcatcctctcccaccctctcctcctcttct 37883913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 2606047 - 2606004
Alignment:
Q  369 caccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||||||||||| |||| || ||||||||||||||||    
T  2606047 caccatttctcacaccatcctctctcattctctcctcctcttct 2606004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 471
Target Start/End: Complemental strand, 8241003 - 8240879
Alignment:
Q  346 cctataaataccctccaaacctccaccatttctcacaccatcgtctca---cactctctcctcctcttctctttcttctacaacaatgtgtttctatagt 442  Q
    |||||||||| ||| ||||||| ||||||||||||||||||  ||| |   ||| ||| ||||||   ||||||||||||||| |||||||||| || |     
T  8241003 cctataaatatccttcaaaccttcaccatttctcacaccatgatcttatctcacactc-cctccta--ctctttcttctacaataatgtgtttccatcgc 8240907  T
Q  443 tggtctttcataaaaataggctactttgg 471  Q
    |||  ||||||||||| ||||||||||||    
T  8240906 tggcatttcataaaaa-aggctactttgg 8240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 18922901 - 18922835
Alignment:
Q  343 ccccctataaataccctccaaacctccaccatttc-tcacaccatcgtctcacactctctcctcctc 408  Q
    |||||||| ||||| |||| ||||| ||||||||| ||| |||||| ||||||| ||||||||||||    
T  18922901 ccccctattaatactctcccaaccttcaccatttcctcataccatcatctcacattctctcctcctc 18922835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 3557040 - 3557092
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| ||||||||||||||| |||| |||| ||| |||||||||||||||    
T  3557040 tccaaacc-ccaccatttctcacatcatcctctcccaccctctcctcctcttct 3557092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 17978071 - 17977998
Alignment:
Q  425 acaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaa 498  Q
    |||||||||||| || ||||   ||||||||||| ||| |||||||||||| || ||||| ||||||| |||||    
T  17978071 acaatgtgtttccattgttgacatttcataaaaagaggttactttggaaactcatggattatatgaacggtcaa 17977998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 27114721 - 27114773
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| |||  ||||||||||||||    
T  27114721 tccaaacc-ccaccatttctcacaccatcctctcccaccatctcctcctcttct 27114773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 8298954 - 8298887
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||  ||| ||| || ||||||||||||    
T  8298954 ccctataaatagccttccaaacc-ccaccatttctcacaccatccgctcccaccctttcctcctcttct 8298887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 11719652 - 11719585
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| ||||  |||||||||||||| |||| ||| |||||||||||||||    
T  11719652 ccctataaatagccttccaaacc-ccactttttctcacaccatcctctcccaccctctcctcctcttct 11719585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 12724092 - 12724184
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||| |||||||||||||||||||| |||| ||  || |||||||||  |||| |||||||||| |||  |||| || ||||| ||||||||    
T  12724092 tccaaacc-ccaccatttctcacaccatcctctcccatcctttcctcctct--tcttccttctacaaccatggttttccatggttggcctttcata 12724184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 12785575 - 12785667
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||| |||| ||||||||||||||| |||| ||  ||||||||||||  |||| |||||||||| |||  |||| || ||||| ||||||||    
T  12785575 tccaaacc-ccactatttctcacaccatcctctcccatcctctcctcctct--tcttccttctacaaccatggttttccatggttggcctttcata 12785667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 200 - 503
Target Start/End: Original strand, 34550991 - 34551298
Alignment:
Q  200 accaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagt 299  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||  |    
T  34550991 accaagtcagtgtttttggccggtggtctgcaccacataaaacacgttttcaaatgtttttaccagcattaatggtgggtaaaacccatttgaaacatat 34551090  T
Q  300 tttttga-catgcattacggggagttacgctatatgcaaccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactc 398  Q
    ||||||| |   ||||| | | || |||  | |||||||||||||  |||||||||| ||||||||||| ||||||||||  |||| || ||||||||||    
T  34551091 tttttgacccaacattaagtgtagatacaatctatgcaaccattcttcctataaatagcctccaaaccttcaccatttct--caccgtcatctcacactc 34551188  T
Q  399 tctcctc-ct-cttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaata-ggc--tactttggaaacacagggattgtatgaacc 493  Q
    ||||||| || || ||||| |||||||||||||||||||  |  ||||| |||||||||||| | |||  |||||||||||  ||||||||||||||||     
T  34551189 tctcctctctcctcctcttccttctacaacaatgtgttttcaccgttggcctttcataaaaagatggctatactttggaaattcagggattgtatgaacg 34551288  T
Q  494 gtcaatgagg 503  Q
    ||||||||||    
T  34551289 gtcaatgagg 34551298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 339 - 463
Target Start/End: Complemental strand, 15474472 - 15474350
Alignment:
Q  339 cattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttcta 438  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||  || |||| | |||||||| | |||| |    
T  15474472 cattccccctataaatacccttccaaccttcaccatttctcacaccatcgtctcacattctctcctcctct--tccttctacaacaacaatatttttcca 15474375  T
Q  439 tagttggtctttcataaaaataggc 463  Q
    | ||||| |||||||| ||| ||||    
T  15474374 tcgttggcctttcatataaagaggc 15474350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 12700287 - 12700180
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| ||||||||| |||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  12700287 ccctataaatagccttccaaacc-ccaccatttttcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 12700191  T
Q  444 ggtctttcata 454  Q
    |||||||||||    
T  12700190 ggtctttcata 12700180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 44496888 - 44496968
Alignment:
Q  345 ccctataaataccctcc-aaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaac 426  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||| |||| ||| ||||||||||||  |||||||||||||||    
T  44496888 ccctataaatagccttcgaaacccccaccatttctcacaccatcctctcccaccctctcctcctct--tctttcttctacaac 44496968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 411
Target Start/End: Original strand, 43253131 - 43253195
Alignment:
Q  346 cctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttc 411  Q
    ||||||||||||||| ||||||||||||||||||||| || | |||| ||| ||||||||||||||    
T  43253131 cctataaataccctctaaacctccaccatttctcaca-caacctctcccaccctctcctcctcttc 43253195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 22859096 - 22859140
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| |||||||||||||||||||    
T  22859096 ccaccatttctcacaccatcctctcccactctctcctcctcttct 22859140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 27217221 - 27217288
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  27217221 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 27217288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 48964698 - 48964631
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  48964698 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 48964631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 23983732 - 23983648
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || ||||| ||||||||    
T  23983732 ccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgttggcctttcata 23983648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 29961800 - 29961907
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| ||||  || ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  29961800 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctccaaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 29961896  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  29961897 ggcctttcata 29961907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 7562705 - 7562620
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||||||||||| | | |||| |||  ||||||||||||||| | |||||||||| ||||||||| || ||||| ||||||||    
T  7562705 ccaccatttctcacacaaacctctcccaccgtctcctcctcttctcct-cttctacaacgatgtgtttccatcgttggcctttcata 7562620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 30516440 - 30516386
Alignment:
Q  399 tctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcat 453  Q
    ||||||| ||| ||||| |||||||||||||||||||| || |||||||||||||    
T  30516440 tctcctcttctcctcttccttctacaacaatgtgtttccatcgttggtctttcat 30516386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 33801734 - 33801841
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||||||||| ||| || | ||||||||||| |||||||| |||| ||| ||||| ||||||  |||| |||||||||| |||  |||| || ||||    
T  33801734 ccctataaataccttcccaaaccccaccatttcttacaccatcctctcccaccctctcttcctct--tcttccttctacaaccatggttttccatcgttg 33801831  T
Q  445 gtctttcata 454  Q
    | ||||||||    
T  33801832 gcctttcata 33801841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 34550925 - 34550981
Alignment:
Q  112 agtttctctcatttttcaccaagtatcgaataaactcggattatatcatccgaaaacc 169  Q
    ||||||||||||||| || | ||||||||||||| ||||||||||| |||||||||||    
T  34550925 agtttctctcatttt-catccagtatcgaataaattcggattatataatccgaaaacc 34550981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 41384062 - 41384151
Alignment:
Q  214 tttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttt 303  Q
    ||||| ||||||||| ||| |||  ||||||||||| ||||||||||||||  |||||||   |||||||| | ||||||||| ||||||    
T  41384062 tttggacggtggtcttcacaacaagaaacacgtttttaaaggtttttaccaatattaatgactggtaaaactcatttgaaacacgttttt 41384151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 50261693 - 50261641
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  50261693 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 50261641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 41086843 - 41086887
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  41086843 ccaccatttctcacaccatcctctcccaccctctcctcctcttct 41086887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 41091611 - 41091655
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  41091611 ccaccatttctcacaccatcctctcccaccctctcctcctcttct 41091655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 49852129 - 49852196
Alignment:
Q  345 ccctataaat-accctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||| ||| |||||||| |||||||||||||||||||| |||| ||| ||||||| |||||||    
T  49852129 ccctataaataaccttccaaacc-ccaccatttctcacaccatcctctcccaccctctccttctcttct 49852196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 500
Target Start/End: Complemental strand, 22426510 - 22426404
Alignment:
Q  389 tctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtat 488  Q
    ||||||||||||||||||| |||     ||||||||||||||| |||| || ||||  ||||| |||||| ||||||||||| |||   |  ||||||||    
T  22426510 tctcacactctctcctcctgttc-----cttctacaacaatgtatttccatcgttgacctttcttaaaaaaaggctactttgaaaatttaaagattgtat 22426416  T
Q  489 gaaccgtcaatg 500  Q
    |||| |||||||    
T  22426415 gaacagtcaatg 22426404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 38861095 - 38861202
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| ||||||||||||||||||||  ||| ||| |||||||||| |  |||| |||||||||| |||  |||| || |||    
T  38861095 ccctataaatagccttccaaacc-ccaccatttctcacaccatcccctcccaccctctcctcctat--tcttccttctacaacgatggttttccatcgtt 38861191  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  38861192 ggcctttcata 38861202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 3517326 - 3517261
Alignment:
Q  347 ctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||| ||||||||    
T  3517326 ctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctccccctcttct 3517261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 41368283 - 41368317
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctc 93  Q
    |||||||||||||| ||||||||||||||||||||    
T  41368283 tcatgtttcagattgtataatctgaaatgtccctc 41368317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 42882311 - 42882267
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||||||| ||||    
T  42882311 ccaccatttctcacaccatcctctcccaccctctcctcctattct 42882267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 44755119 - 44755075
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| ||||| |||||||||    
T  44755119 ccaccatttctcacaccatcctctcccaccctctcatcctcttct 44755075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 61 - 500
Target Start/End: Complemental strand, 19514705 - 19514260
Alignment:
Q  61 atgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatcat 160  Q
    ||||||| |||||||||||| ||||| |  |||  |||||||| |  || |||||||  | ||||||||||  |||||||||||| ||||||||||| ||    
T  19514705 atgtttcggattatataatccgaaatatttctcaccctacataaggtacatagtttcctttatttttcacct-gtatcgaataaattcggattatataat 19514607  T
Q  161 ccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgttttt-ggccggtggtctgcaccacataaaacacgttttcaaaggtttt 259  Q
    | |||||||||| | |||||||||  ||||||||||  ||| |||||| ||||||| || ||||||||| ||||| ||||||||||||||||||||||||    
T  19514606 ctgaaaaccatgtgtaggaattcaatttatataatctgaacaaagtcagtgttttttggtcggtggtctacaccaaataaaacacgttttcaaaggtttt 19514507  T
Q  260 taccagcattaatggtcggtaaaacccctttgaaacaagttttttgac-atgcattacggggagttacgctatatgcaacca----ttccccctataaat 354  Q
    ||||  |||||||||  | |||||||||||||||||| ||||||||||   |||||| |   |||||| || ||||| || |    ||  || |||||||    
T  19514506 taccgccattaatggctgctaaaacccctttgaaacacgttttttgactcagcattaagaatagttacactctatgc-acaatttgttttccttataaat 19514408  T
Q  355 accctccaaacctccaccatttctcacaccatcgtctcacactctc--tcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttca 452  Q
    | ||| ||||||| ||| ||||||||||||||| ||||||||||||  |||   ||  ||| | ||||| ||||||| ||||||||| |||||  |||||    
T  19514407 agccttcaaaccttcactatttctcacaccatcatctcacactctctttccctttcccctcatccttctgcaacaatatgtttctatcgttggcttttca 19514308  T
Q  453 taaaaatagg-ctactttggaaacacagggattgtatgaaccgtcaatg 500  Q
    |||||||||| ||| |||| |||| |||||||||||||||| |||||||    
T  19514307 taaaaataggacta-tttgaaaactcagggattgtatgaacggtcaatg 19514260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 344 - 491
Target Start/End: Original strand, 18501643 - 18501785
Alignment:
Q  344 cccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||     ||||||||| |||||||||| || |||    
T  18501643 cccctataaatacccttcaaaccttcaccatttctcacaccatcatctcacactttctcctcctcttc-----cttctacaaaaatgtgtttccatcgtt 18501737  T
Q  444 ggtctttcataaaaataggctactttggaaacacagggattgtatgaa 491  Q
    ||||||||||||||| |||||||||| ||||   ||||||||||||||    
T  18501738 ggtctttcataaaaaaaggctactttagaaatgaagggattgtatgaa 18501785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 1380674 - 1380757
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaaca 296  Q
    |||||| |||||||||||||||||  |||||||||||||| |||||||||||||||||||||  | |||||  |||||||||||    
T  1380674 ttttggacggtggtctgcaccacaagaaacacgttttcaatggtttttaccagcattaatggctgataaaagtcctttgaaaca 1380757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 1386778 - 1386861
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaaca 296  Q
    |||||| |||||||||||||||||  |||||||||||||| |||||||||||||||||||||  | |||||  |||||||||||    
T  1386778 ttttggacggtggtctgcaccacaagaaacacgttttcaatggtttttaccagcattaatggctgataaaagtcctttgaaaca 1386861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 33951337 - 33951444
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| ||||||| ||||  |||| |||||||||| |||  |||| || |||    
T  33951337 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctactct--tcttccttctacaaccatggttttccatcgtt 33951433  T
Q  444 ggtctttcata 454  Q
    |||||||||||    
T  33951434 ggtctttcata 33951444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 34847558 - 34847479
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaac 426  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||||||||||||  |||||||||||||||    
T  34847558 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctct--tctttcttctacaac 34847479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 35794868 - 35794975
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  35794868 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 35794964  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  35794965 ggcctttcata 35794975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 31267888 - 31267822
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaa 428  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||||  ||||| ||||||||||||    
T  31267888 tccaaacctc-accatttctcacaccatcatctcacattctctcctcctc--ctcttccttctacaacaa 31267822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 36311814 - 36311747
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  36311814 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 36311747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 15030677 - 15030622
Alignment:
Q  419 tctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaa 474  Q
    |||||||| ||||||||| || |||||||||||||| ||||||||| |||||||||    
T  15030677 tctacaacgatgtgtttccatcgttggtctttcatagaaataggcttctttggaaa 15030622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 20171989 - 20172051
Alignment:
Q  390 ctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcat 453  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||  || ||||| |||||||    
T  20171989 ctcacactctctcctcctcttc-cttccttctacaacaatgtgttttcatcgttggcctttcat 20172051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 46255268 - 46255375
Alignment:
Q  345 ccctataaat-accctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    |||||||||| ||| |||||||| |||||||||||||||||||| |||| ||| |||||||| |||  |||| |||||||||| |||  |||| || |||    
T  46255268 ccctataaataaccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcatct--tcttccttctacaaccatggttttccatcgtt 46255364  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  46255365 ggcctttcata 46255375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 14816377 - 14816325
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  14816377 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 14816325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 15263373 - 15263321
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  15263373 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 15263321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 25528843 - 25528776
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||||||| ||||    
T  25528843 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctattct 25528776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 43458609 - 43458653
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  43458609 ccaccatttctcacaccatcctctcccaccctctcctcctcttct 43458653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 29883237 - 29883181
Alignment:
Q  348 tataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcct 404  Q
    |||||||||  | ||||||| ||||||||||||||||||  |||||||| |||||||    
T  29883237 tataaatacttttcaaaccttcaccatttctcacaccattatctcacaccctctcct 29883181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 27025501 - 27025703
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatc 158  Q
    |||||||| ||||||||||||||||||| ||| ||  ||||| || |  || ||||||||||||||||| ||| ||||||||||||| |||||||||||     
T  27025501 tcatgttttagattatataatctgaaatttccgtcaccctacgtaaggtacatagtttctctcatttttaacccagtatcgaataaattcggattatata 27025600  T
Q  159 atccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaaggttt 258  Q
    |||||||||| ||||  ||||||||| |||||||||||| |||||||||| || ||||| | |||| ||| ||| ||||||||| |||||||||||| ||    
T  27025601 atccgaaaactatggataggaattcagattatataatccgaaccaagtcagtg-ttttgacaggtgatctacactacataaaacgcgttttcaaagggtt 27025699  T
Q  259 ttac 262  Q
    ||||    
T  27025700 ttac 27025703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 27036707 - 27036909
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatc 158  Q
    |||||||| ||||||||||||||||||| ||  ||  ||||| || |  || ||||||||||||||||| ||| ||||||||||||| |||||||||||     
T  27036707 tcatgttttagattatataatctgaaatttctgtcaccctacgtaaggtacatagtttctctcatttttaacccagtatcgaataaattcggattatata 27036806  T
Q  159 atccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaaggttt 258  Q
    |||||||||| |||   ||||||||| |||||||||||| |||||||||| || ||||| |||||| ||||||| ||||||||| |||||||||||| ||    
T  27036807 atccgaaaactatgtttaggaattcagattatataatccgaaccaagtcagtg-ttttgaccggtgatctgcactacataaaacgcgttttcaaagggtt 27036905  T
Q  259 ttac 262  Q
    ||||    
T  27036906 ttac 27036909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 307
Target Start/End: Original strand, 12719306 - 12719490
Alignment:
Q  120 tcatttttcaccaagtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggc 219  Q
    ||||||||||| | |||||||||||| | ||||||||| ||||| || | |||||||| |||||| |||| || |||  |||  ||||||  | ||| ||    
T  12719306 tcatttttcacga-gtatcgaataaatttggattatataatccgtaatcaatgggaag-aattcagattacattatctgaacttagtcaaattcttttgc 12719403  T
Q  220 cggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||| |||||||  ||||||||| ||||| |||| ||||||||||    
T  12719404 cggtggtctgcaccacaaataacacgttttcaaaggtttttaccagccttaatggctggtaaaacctctttg-aacacgttttttgac 12719490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 24628529 - 24628451
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttg 291  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||   ||||||| ||||||    
T  24628529 ttttggtcggtggtctgcaccacaagaaacacgttttcaaaggtttttaccagcattaatggctagtaaaactcctttg 24628451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 213 - 307
Target Start/End: Original strand, 33844582 - 33844675
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    |||||| |||| || |||||||||  |||||| |||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||    
T  33844582 ttttggacggtagtttgcaccacaagaaacacattttcaaaggtttttaccagcattaatggctggtaaaacccctttg-aacacgttttttgac 33844675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 1477176 - 1477272
Alignment:
Q  210 tgtttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    |||||||||  ||||| ||||||||||  ||||||||||||||||||||| || |||||||||||  ||||||||||||||  |||| ||||||||||    
T  1477176 tgtttttggatggtggcctgcaccacaagaaacacgttttcaaaggttttcactagcattaatggctggtaaaaccccttt-caacacgttttttgac 1477272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 1885387 - 1885460
Alignment:
Q  338 ccattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttc 411  Q
    ||||||||||||||||||| || | ||||| ||||||||||||||||||| ||||||| ||||| |||||||||    
T  1885387 ccattccccctataaatacgcttccaaccttcaccatttctcacaccatcatctcacattctcttctcctcttc 1885460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 54310465 - 54310385
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    |||||| |||||||||||||| ||  ||||| |||||||||||||||||||||||||||| | | |||||||| |||||||    
T  54310465 ttttggacggtggtctgcaccccaagaaacatgttttcaaaggtttttaccagcattaattgcctgtaaaaccgctttgaa 54310385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 373 - 452
Target Start/End: Original strand, 29583456 - 29583531
Alignment:
Q  373 atttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttca 452  Q
    ||||||||  ||||| ||||||||| |||||||||    |||||||||||||||||||||||||||| ||||||||||||    
T  29583456 atttctcatcccatcatctcacactttctcctcct----tctttcttctacaacaatgtgtttctatcgttggtctttca 29583531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 36402535 - 36402451
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||||||||||||||| |||| |||||||||||||||  ||||| |||||||||| |||  |||| || ||||| ||||||||    
T  36402535 ccaccatttctcacaccatcctctcccactctctcctcctc--ctcttccttctacaaccatggttttccatcgttggcctttcata 36402451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 453
Target Start/End: Complemental strand, 41193481 - 41193375
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  41193481 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 41193385  T
Q  444 ggtctttcat 453  Q
    || |||||||    
T  41193384 ggcctttcat 41193375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 11161982 - 11162043
Alignment:
Q  341 ttccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctc 402  Q
    ||||||||||||||| ||| | ||||| |||||||||||||||| || ||||||||||||||    
T  11161982 ttccccctataaatatccttccaaccttcaccatttctcacaccttcatctcacactctctc 11162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 32530208 - 32530275
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| | || | |||||||||||||||||||| |||| ||| |||||||||||||||    
T  32530208 ccctataaatagccttccaaacaccaccatttctcacaccatcctctcccaccctctcctcctcttct 32530275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 41182303 - 41182410
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| | | ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  41182303 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccgccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 41182399  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  41182400 ggcctttcata 41182410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 47647321 - 47647388
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| | ||  ||||||||||||||||||||| |||| ||| |||||||||||||||    
T  47647321 ccctataaataaccttccaaattccaccatttctcacaccatcctctcccaccctctcctcctcttct 47647388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 454
Target Start/End: Original strand, 39586978 - 39587081
Alignment:
Q  349 ataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtct 448  Q
    ||||||| ||| | || |||||||||||||||||||||| |||| ||| ||||||||| ||  |||| |||||||||| |||  |||| || ||||| ||    
T  39586978 ataaatagccttccaaactccaccatttctcacaccatcctctcccaccctctcctccact--tcttccttctacaaccatggttttccatcgttggcct 39587075  T
Q  449 ttcata 454  Q
    ||||||    
T  39587076 ttcata 39587081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 227778 - 227830
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| ||||||||| |||||||||| |||| |||||||||||||||||||    
T  227778 tccaaacc-ccaccatttttcacaccatcctctcccactctctcctcctcttct 227830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 3733257 - 3733176
Alignment:
Q  213 ttttggccggtggtctgcaccacataaa-acacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    |||||| || ||| ||||||||||  || ||||||||||||||||||||| ||| ||||||||  |||||||| ||||||||    
T  3733257 ttttggtcgatggcctgcaccacaagaacacacgttttcaaaggtttttatcagaattaatgggtggtaaaactcctttgaa 3733176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 6936844 - 6936896
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  6936844 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 6936896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 10508928 - 10508884
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  10508928 ccaccatttctcacaccatcctctcccaccctctcctcctcttct 10508884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 47013474 - 47013430
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  47013474 ccaccatttctcacaccatcctctcccaccctctcctcctcttct 47013430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 492
Target Start/End: Original strand, 1477306 - 1477454
Alignment:
Q  348 tataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcc---tcttc-tctttcttctaca-acaatgtgtttctatagt 442  Q
    |||||||| ||| ||||||| ||| ||||||||||||||| ||||| |||||||| |||   || || ||||  |||||   |||||||||||| || ||    
T  1477306 tataaatagccttcaaaccttcac-atttctcacaccatcatctcatactctctcatccctgtcatcctcttcattctatgcacaatgtgtttccatcgt 1477404  T
Q  443 tggtctttcataaaaataggctactttggaaacacagggattgtatgaac 492  Q
    |||||||||||||||   |||| |||||||||| ||| |||| |||||||    
T  1477405 tggtctttcataaaatgcggctcctttggaaactcagtgattatatgaac 1477454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 1637449 - 1637498
Alignment:
Q  363 aacctccaccatttc-tcacaccatcgtctcacactctctcctcctcttc 411  Q
    ||||| ||||||||| |||||||||| ||||| |||||||||||||||||    
T  1637449 aaccttcaccatttcatcacaccatcatctcatactctctcctcctcttc 1637498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 49165804 - 49165760
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    |||||||||||||||||||| |||| ||| ||||| |||||||||    
T  49165804 ccaccatttctcacaccatcctctcccaccctctcatcctcttct 49165760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 59 - 307
Target Start/End: Complemental strand, 86686 - 86435
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatc 158  Q
    ||||||||  ||||||| ||||  |||||||||||  |||| ||| |  | |||||||||||||||||||||| | ||| ||| ||| | |||||||||     
T  86686 tcatgtttaggattatagaatccaaaatgtccctccccctatataaggtatgtagtttctctcatttttcacccaatattgaaaaaatttggattatata 86587  T
Q  159 atccgaaaaccatgggaaggaattcatattatat---aatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaagg 255  Q
    ||||||||| ||  || |  | |||| |||||||   ||||||||| ||||||| |||||| |||| |||||| |||| ||||||||| | |||||||||    
T  86586 atccgaaaatcaaaggcaaaagttcagattatattataatccaaacaaagtcaaggttttttgccgatggtcttcacctcataaaacatggtttcaaagg 86487  T
Q  256 tttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    ||||||||   |||||| |  |||||||||||||||||||| ||||||||||    
T  86486 tttttacctctattaatagcaggtaaaacccctttgaaacacgttttttgac 86435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 59 - 296
Target Start/End: Original strand, 57645 - 57885
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcggattatatc 158  Q
    ||||||||  ||||||||||||  ||| |||||||  |||||||| |  | |||  ||||||||||||||||| ||||||||| ||| |||||||||||     
T  57645 tcatgtttaggattatataatccaaaacgtccctcaccctacataaggtatgtatcttctctcatttttcacctagtatcgaaaaaattcggattatata 57744  T
Q  159 atccgaaaaccatgggaaggaattcatattatat---aatccaaaccaagtcaatgtttttggccggtggtctgcaccacataaaacacgttttcaaagg 255  Q
    |||| |||| || ||| |  | |||| |||||||   ||||  ||| |||||| ||||||| ||||||||| | |||| |||||||||||||||||||||    
T  57745 atccaaaaatcaggggcaaaagttcagattatattataatctgaacaaagtcagtgttttttgccggtggtgttcacctcataaaacacgttttcaaagg 57844  T
Q  256 tttttaccagcattaatggtcggtaaaacccctttgaaaca 296  Q
    ||||||||   |||||| |   |||||||||||||||||||    
T  57845 tttttacctctattaatagcaagtaaaacccctttgaaaca 57885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 57980 - 58104
Alignment:
Q  376 tctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaac 475  Q
    |||| ||||||| |||||||||||| ||| |||| || || ||||| ||| ||||||||||||| ||||| |||||||||||||| ||  |||||||| |    
T  57980 tctcgcaccatcatctcacactctccccttctctcctattccttctgcaaaaatgtgtttctatcgttggcctttcataaaaataagcctctttggaagc 58079  T
Q  476 acagggattgtatgaaccgtcaatg 500  Q
     |||||||||||||||| |||||||    
T  58080 tcagggattgtatgaacggtcaatg 58104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 135 - 293
Target Start/End: Complemental strand, 39806855 - 39806697
Alignment:
Q  135 tatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtca-atgtttttggccggtggtctgcacc 233  Q
    ||||| ||||| | ||||||||| ||| | ||||||||||| |||||||||||||||||||||  |||  |||| ||  |||||| ||||||||| |||     
T  39806855 tatcgtataaatttggattatataatctggaaaccatggga-ggaattcatattatataatccggaccgtgtcagattcttttggacggtggtcttcact 39806757  T
Q  234 acataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    |||   |||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  39806756 acaagcaacacgttttcaaaggtttttaccagcattaatggctggtaaaacccctttgaa 39806697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 133 - 293
Target Start/End: Original strand, 23186413 - 23186572
Alignment:
Q  133 agtatcgaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgtttttggccggtggtctgcac 232  Q
    |||| |||||||| ||||| ||||| |||  ||||||||  || ||| |||| |||||||||||| ||   ||||| | | ||||| || ||||||||||    
T  23186413 agtaacgaataaattcggaatatataatctaaaaaccatatga-ggatttcagattatataatccgaaaatagtcagtttctttggtcgttggtctgcac 23186511  T
Q  233 cacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaa 293  Q
    ||||   |||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  23186512 cacaagcaacacgttttcaaaggtttttaccagcattaatggctggtaaaacccctttgaa 23186572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 503
Target Start/End: Original strand, 49606694 - 49606819
Alignment:
Q  381 caccatcgtctcacactctctcctcctcttctc---tttcttctacaacaatgtgtttctatagttggtctttcataaaaataggctactttggaaacac 477  Q
    ||||||| ||||||||||||| | ||||| |||   |||||| |||||||||||||||  ||  |||  |||||||||||||||| |||||||||||| |    
T  49606694 caccatcatctcacactctcttcccctctcctcctctttcttatacaacaatgtgttttcatcattgacctttcataaaaatagggtactttggaaactc 49606793  T
Q  478 agggattgtatgaaccgtcaatgagg 503  Q
    |  |||||||||||| ||||||||||    
T  49606794 aaagattgtatgaactgtcaatgagg 49606819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 49527242 - 49527176
Alignment:
Q  343 ccccctataaataccctccaaacctccaccattt-ctcacaccatcgtctcacactctctcctcctc 408  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| ||||||||||||    
T  49527242 ccccctataaataccctcccaaccttcaccatttcctcacaccatcatctcacattctctcctcctc 49527176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 2013450 - 2013343
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| ||||||||||| |||||||| |||| ||| ||||||||||||  ||||||||||||||| |||  |||| || |||    
T  2013450 ccctataaatagccttccaaacc-ccaccatttcttacaccatcctctcccaccctctcctcctct--tctttcttctacaaccatggatttccatcgtt 2013354  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  2013353 ggcctttcata 2013343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 35319613 - 35319506
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| |||| |||||||||||  |||| |||||||||| |||  |||| || |||    
T  35319613 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccactatctcctcctct--tcttccttctacaactatggttttccatcgtt 35319517  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  35319516 ggcctttcata 35319506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 456
Target Start/End: Original strand, 16452353 - 16452462
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| ||||||||||||||||||||  ||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  16452353 ccctataaatatccttccaaacc-ccaccatttctcacaccatccactcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 16452449  T
Q  444 ggtctttcataaa 456  Q
    || ||||||||||    
T  16452450 ggcctttcataaa 16452462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 16024268 - 16024335
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| |||| ||||||||||||||| |||| |||||||||||||||||||    
T  16024268 ccctataaatagccttccaaacc-ccactatttctcacaccatcctctctcactctctcctcctcttct 16024335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 38218010 - 38217943
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  38218010 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 38217943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 43841640 - 43841573
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||    
T  43841640 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctcttct 43841573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 168256 - 168149
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||  |||| ||| ||||||||||||  |||| ||||| |||| |||  ||||||| |||    
T  168256 ccctataaatagccttccaaacc-ccaccatttctcacaccattctctcccaccctctcctcctct--tcttccttctccaaccatggttttctatcgtt 168160  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  168159 ggcctttcata 168149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 12692419 - 12692329
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctctacctacatacgacacgtagtttctctcatttttcaccaagtatcgaataaactcgg 150  Q
    ||||||||| ||||||||||||||||||||||| |  |||||||| |  ||| ||||||  |||||||||| ||||| ||||||||| ||||    
T  12692419 tcatgtttcggattatataatctgaaatgtcccgcaccctacataaggtacgcagtttccttcatttttca-caagtgtcgaataaattcgg 12692329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 453
Target Start/End: Complemental strand, 15542551 - 15542460
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcat 453  Q
    |||||||| |||||||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || ||||| |||||||    
T  15542551 tccaaacc-ccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgttggcctttcat 15542460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 28780507 - 28780400
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| ||| ||||||| ||||||||||||||| |||| ||||  || ||||||||||||  |||| |||||||||| |||  |||| ||||||    
T  28780507 ccctataaatagccttccaaacc-ccaccatttctcacatcatcctctcctaccctctcctcctct--tcttccttctacaaccatgattttccatagtt 28780411  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  28780410 ggcctttcata 28780400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 31093509 - 31093616
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||| ||| || |||||||||  ||||||||||||||  |||  |||| || |||    
T  31093509 ccctataaatagccttccaaacc-ccaccatttctcacaccatcctctcccaccctatcctcctct--tctttcttctacaatcatggttttccatcgtt 31093605  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  31093606 ggcctttcata 31093616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 33281511 - 33281595
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||||||||||||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || ||||| ||||||||    
T  33281511 ccaccatttctcacaccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgttggcctttcata 33281595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 35159123 - 35159230
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| ||||||||||||| |||||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || |||    
T  35159123 ccctataaatagccttccaaacc-ccaccatttctcataccatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgtt 35159219  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  35159220 ggcctttcata 35159230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 498
Target Start/End: Complemental strand, 8909850 - 8909793
Alignment:
Q  441 gttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaa 498  Q
    ||||| |||||||||||| | |||||||||||||| ||||| |||||||||| |||||    
T  8909850 gttggcctttcataaaaagatgctactttggaaactcagggtttgtatgaacggtcaa 8909793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 4189613 - 4189521
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||| ||||||||||||||| |||  |||| ||| ||||||||||||  |||| |||||||||| |||  ||||||| ||||| ||||||||    
T  4189613 tccaaacc-ccaccatttctcacaacattctctcccaccctctcctcctct--tcttccttctacaaccatggttttctatcgttggcctttcata 4189521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 6963877 - 6963944
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| |||||||||||||||| ||| |||| ||| |||||||||||||||    
T  6963877 ccctataaatagccttccaaacc-ccaccatttctcacactatcctctcccaccctctcctcctcttct 6963944  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 49374718 - 49374785
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| || |||||||| ||||||||||||||| |||| |||| ||| |||||||||||||||    
T  49374718 ccctataaatagccttccaaacc-ccaccatttctcacatcatcctctcccaccctctcctcctcttct 49374785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 20754436 - 20754479
Alignment:
Q  339 cattccccctataaataccctccaaacctccaccatttctcaca 382  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||    
T  20754436 cattccccctataaatacccttccaaccttcaccatttctcaca 20754479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 45924994 - 45925101
Alignment:
Q  345 ccctataaata-ccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagtt 443  Q
    ||||||||||| || |||||||| ||||||||||||| |||||| |||| ||| || |||||||||  |||| |||||||||| |||  |||| || |||    
T  45924994 ccctataaatagccttccaaacc-ccaccatttctcaaaccatcctctcccaccctatcctcctct--tcttccttctacaaccatggttttccatcgtt 45925090  T
Q  444 ggtctttcata 454  Q
    || ||||||||    
T  45925091 ggcctttcata 45925101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 52416645 - 52416603
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctctt 410  Q
    |||||||||||||||||||| |||| ||| |||||||||||||    
T  52416645 ccaccatttctcacaccatcctctctcaccctctcctcctctt 52416603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 55137064 - 55137171
Alignment:
Q  345 ccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttg 444  Q
    ||||||||||| | | | || || |||||||||||||| |||| |||| ||| ||||||||||||  |||| |||||||||| |||  |||| || ||||    
T  55137064 ccctataaatagctttccaaactgcaccatttctcacatcatcctctcccaccctctcctcctct--tcttccttctacaaccatggttttccatcgttg 55137161  T
Q  445 gtctttcata 454  Q
    | ||||||||    
T  55137162 gcctttcata 55137171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 1355822 - 1355762
Alignment:
Q  344 cccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctc 405  Q
    ||||||||||||||||| |||| | ||| |||||| ||||  ||||||||||||||||||||    
T  1355822 cccctataaataccctc-aaacattcacaatttctaacacggtcgtctcacactctctcctc 1355762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 38550985 - 38550899
Alignment:
Q  368 ccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcataaa 456  Q
    |||| ||||||||||||||| |||| ||| |||||||||||   |||| |||||||||| |||  |||| || ||||| ||||||||||    
T  38550985 ccactatttctcacaccatcctctcccaccctctcctcctc--atcttccttctacaaccatggttttcgatcgttggcctttcataaa 38550899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 9035819 - 9035768
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttc 411  Q
    |||||||| |||||||||||||||||||| |||  ||| ||||||||||||||    
T  9035819 tccaaacc-ccaccatttctcacaccatcctcttccaccctctcctcctcttc 9035768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 454
Target Start/End: Complemental strand, 16740880 - 16740779
Alignment:
Q  349 ataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtct 448  Q
    |||||||||||  || ||| ||| | ||||||  ||||| ||||||||||||||||||||    |||||||  ||||||||||||||  || |||||| |    
T  16740880 ataaatacccttgaatccttcacaaattctcatcccatcatctcacactctctcctcctc----ctttcttaaacaacaatgtgttttcattgttggttt 16740785  T
Q  449 ttcata 454  Q
    ||||||    
T  16740784 ttcata 16740779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 23186339 - 23186383
Alignment:
Q  59 tcatgtttcagattatataatctgaaatgtccctctacctacata 103  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||    
T  23186339 tcatgtttcggattgtataatctgaaatgtccctcaccctacata 23186383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 40728446 - 40728538
Alignment:
Q  359 tccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    |||||||| |||||||||||||||||| | |||| | | ||||||||||||  |||| |||||||||| |||  |||| || ||||| ||||||||    
T  40728446 tccaaacc-ccaccatttctcacaccaacctctcccgccctctcctcctct--tcttccttctacaaccatggttttccatcgttggcctttcata 40728538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 45229501 - 45229578
Alignment:
Q  375 ttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcata 454  Q
    ||||||||||||| |||| ||| ||||||||||||  ||||  ||||||||| |||  |||| || ||||||||||||||    
T  45229501 ttctcacaccatcctctcccaccctctcctcctct--tcttcattctacaaccatggttttccatcgttggtctttcata 45229578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 424300 - 424229
Alignment:
Q  236 ataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttgac 307  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  424300 ataaaacatgttttcaaaggtttttaccagcattaatggctggtaaaacccctttgaaacacgttttttgac 424229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 425615 - 425529
Alignment:
Q  139 gaataaactcggattatatcatccgaaaaccatgggaaggaattcatattatataatccaaaccaagtcaatgt-ttttggccggtg 224  Q
    ||||||| ||||||||||| || |||||||| |  | ||||||||| |||||||||||| ||| |||||||||| ||||||||||||    
T  425615 gaataaattcggattatataattcgaaaaccctatgtaggaattcagattatataatccgaacaaagtcaatgttttttggccggtg 425529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 340 - 503
Target Start/End: Original strand, 181372 - 181529
Alignment:
Q  340 attccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctat 439  Q
    ||||||||||  ||| |||| ||||||| ||||||||||||||||||  ||| |||||||||||||||||||     ||||||||| |||||||||| ||    
T  181372 attccccctacgaatgcccttcaaaccttcaccatttctcacaccattatcttacactctctcctcctcttc-----cttctacaataatgtgtttccat 181466  T
Q  440 agttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaatgagg 503  Q
     ||||| |||||||||||| | | |||||| ||||  ||| ||||| ||||||  |||||||||    
T  181467 cgttggcctttcataaaaa-aagttactttagaaattcagagattggatgaacgatcaatgagg 181529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 352 - 500
Target Start/End: Original strand, 11565 - 11708
Alignment:
Q  352 aataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttc 451  Q
    ||||| || ||||| | ||||||||||||||||||| |||||||||||||||||||||||     |||||||||||||||||||| || |||   |||||    
T  11565 aatactcttcaaactttcaccatttctcacaccatcatctcacactctctcctcctcttc-----cttctacaacaatgtgtttccatcgttaacctttc 11659  T
Q  452 ataaaaataggctactttggaaacacagggattgtatgaaccgtcaatg 500  Q
    ||||||| || |||| ||  |||   | ||||||||||||| |||||||    
T  11660 ataaaaagagactacgttaaaaatttatggattgtatgaacggtcaatg 11708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 6568 - 6477
Alignment:
Q  214 tttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttttga 306  Q
    ||||| ||||||||||||||||| | ||||| ||||||||||||||||||| | |||||||  ||||||||||||||| |||| |||||||||    
T  6568 tttggtcggtggtctgcaccacaaataacacattttcaaaggtttttaccaactttaatggctggtaaaacccctttg-aacacgttttttga 6477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 1337 - 1406
Alignment:
Q  339 cattccccctataaataccctccaaacctccaccatttctcacaccatcgtctcacactctctcctcctc 408  Q
    ||||||||||||||||||| | | ||||| |||||||||||||| |||| |||||||| |||||||||||    
T  1337 cattccccctataaataccattccaaccttcaccatttctcacatcatcatctcacacactctcctcctc 1406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 17084 - 17011
Alignment:
Q  425 acaatgtgtttctatagttggtctttcataaaaataggctactttggaaacacagggattgtatgaaccgtcaa 498  Q
    ||||| |||||| || | |||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||    
T  17084 acaatatgtttccatcgctggtctttcataaaaagaggctactttggaaactcagggattatatgaacggtcaa 17011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 17263 - 17207
Alignment:
Q  247 tttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttt 303  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||    
T  17263 tttcaaaggtttttaccagcattaatggctggtaaaactcctttgaaacacgttttt 17207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 500
Target Start/End: Complemental strand, 246020 - 245888
Alignment:
Q  364 acctccaccatttctcacaccatcgtctcacactctctcctcctcttctctttcttctacaacaatgtgtttctatagttggtctttcat-aaaaatagg 462  Q
    |||| ||||||||||||||||||| ||| |||||||||| ||||||||     ||||||||||||||| |||  || ||||||||||||| ||||| | |    
T  246020 accttcaccatttctcacaccatcatctgacactctctcgtcctcttc-----cttctacaacaatgttttttcatcgttggtctttcattaaaaaaatg 245926  T
Q  463 ctactttggaaacacagggattgtatgaaccgtcaatg 500  Q
     ||||   ||||  |||||||||||||||| |||||||    
T  245925 ttactaaagaaattcagggattgtatgaacggtcaatg 245888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 61264 - 61218
Alignment:
Q  213 ttttggccggtggtctgcaccacataaaacacgttttcaaaggtttt 259  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||    
T  61264 ttttggccggtggtctgcaccacaagaaacacgttttcaaacgtttt 61218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 38070 - 38025
Alignment:
Q  363 aacctccaccatttctcacaccatcgtctcacactctctcctcctc 408  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  38070 aaccttcaccatttctcacaccatcatctcacattctctcctcctc 38025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 36547 - 36459
Alignment:
Q  215 ttggccggtggtctgcaccacataaaacacgttttcaaaggtttttaccagcattaatggtcggtaaaacccctttgaaacaagttttt 303  Q
    |||| ||||||||| ||| |||  ||||||||||| ||||||||||||||  |||||||   |||||||| | ||||||||| ||||||    
T  36547 ttggacggtggtcttcacaacaagaaacacgtttttaaaggtttttaccaatattaatgactggtaaaactcatttgaaacacgttttt 36459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 47166 - 47099
Alignment:
Q  345 ccctataaataccct-ccaaacctccaccatttctcacaccatcgtctcacactctctcctcctcttct 412  Q
    ||||||||||| ||| ||||||| ||||||||||||||| |||| |||  ||| |||||||||||||||    
T  47166 ccctataaatagccttccaaacc-ccaccatttctcacaacatcctcttccaccctctcctcctcttct 47099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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