View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11375_low_9 (Length: 529)
Name: NF11375_low_9
Description: NF11375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11375_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 6 - 511
Target Start/End: Complemental strand, 1887482 - 1886976
Alignment:
| Q |
6 |
aggagcacagacccgatgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtaggaaccaaaaacacagtctgctcggctacaaactcccaa |
105 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1887482 |
aggaacacaaacccgatgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtaggaaccaaaaacacaatctgctcggctacaaactcccaa |
1887383 |
T |
|
| Q |
106 |
gttgcaatgtggtgcgtgtaaaggtaaggaatcagcatcgataaaatagcagaaagaaagaaaccaacaatggaaagccaactcttccaaagagacaaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1887382 |
gttgcaatgtggtgcgtgtaaaggtaaggaatcagcatcgataaaatagcagaaagaaagaaaccaacaatggaaagccaactcttccaaagagacaaag |
1887283 |
T |
|
| Q |
206 |
tgccgcaacggaccaggtgaacacggtgatggggacaaagagaatgaaagcgagcgaggg-ttgattttacgaggaccaaaaggtggagggattaaggag |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1887282 |
tgccgcaacggaccaggtgaacacggtgatggggacaaagagaatgaaagcgagcgaggggttgattttacgaggaccaaaaggtggagggattaaggag |
1887183 |
T |
|
| Q |
305 |
atagaaacggagaagatgaattgggaaaggaggaaaatgaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgcca |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1887182 |
atagaaacggagaagatgaattgggaaaggaggaaaatgaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgcca |
1887083 |
T |
|
| Q |
405 |
tatcaaaaagcttaggaataatttgttccttaatctcacaacttcttttggttttggttttggagacattgcttaatttatacctttctcattattatcc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1887082 |
tatcaaaaagcttaggaataatttgttccttaatctcacaacttcttttggttttggttttggagacattgcttaatttatacctttctcattattatcc |
1886983 |
T |
|
| Q |
505 |
gtcttat |
511 |
Q |
| |
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||||||| |
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| T |
1886982 |
gtcttat |
1886976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 183 - 446
Target Start/End: Original strand, 1671314 - 1671594
Alignment:
| Q |
183 |
ccaactcttccaaagagacaaagtgccgcaacggaccaggtgaacacggtgatggggacaaagagaatgaaagcgagcgag-ggttgattttacgaggac |
281 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
1671314 |
ccaactcttccaaagagacaaagcgccgcaacggaccaggagaacgcgaagatggggacaaagagaaggaaagcgagcgagaggttgattttacgaggac |
1671413 |
T |
|
| Q |
282 |
caaaaggtggagggattaaggagatagaaacggagaagatgaattgggaaaggag----------------gaaaatgaggtgttggggataatggaaaa |
365 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
1671414 |
caaaaggtgaagggattaaggagatagaaacggagaagatgaattgggaaaagaggaaaaggggaaaagacgaaaatgaggtgttggggataatggaaaa |
1671513 |
T |
|
| Q |
366 |
gtagagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttaggaataatttgttccttaatctcacaac |
446 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1671514 |
gtagagaaggaagatgagagttgagggtattaattgccatatcaaaaaggttaggaataatttgttccttaatctcacaac |
1671594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 1670885 - 1671071
Alignment:
| Q |
6 |
aggagcacagacccgatgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtaggaaccaaaaacacagtctgctcggctacaaactcccaa |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||| | |
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|
| T |
1670885 |
aggaacacaaacccgatgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtagcaacaaataacacaatctgctcggctacaaactcccga |
1670984 |
T |
|
| Q |
106 |
gttgcaatg-------tggtgc--gtgtaaaggtaaggaatcagcatcgataaaatagcagaaagaaagaaaccaacaatggaaagc |
183 |
Q |
| |
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|||||| || || || | || | ||| |||||||| || |||||||||||||||| |||||||||||||||||||||| |
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| T |
1670985 |
gttgcagtgatgcacttgatgaaagggtcagggtcaggaatcatcaccgataaaatagcagaagaaaagaaaccaacaatggaaagc |
1671071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 343 - 461
Target Start/End: Original strand, 1665397 - 1665512
Alignment:
| Q |
343 |
gaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttaggaataatttgttccttaatctca |
442 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
1665397 |
gaggtgttggggagaatggaaaagtagagaaggaaaatgagagttgtgggtattgattgccatatcaaaaagcttacg---aatttgttccttaatctca |
1665493 |
T |
|
| Q |
443 |
caacttcttttggttttgg |
461 |
Q |
| |
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|||||||| ||||||||| |
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| T |
1665494 |
gaacttcttctggttttgg |
1665512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 503
Target Start/End: Original strand, 1665562 - 1665592
Alignment:
| Q |
473 |
ttgcttaatttatacctttctcattattatc |
503 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
1665562 |
ttgcttaatttatacctttctcattattatc |
1665592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 423
Target Start/End: Complemental strand, 5995023 - 5994968
Alignment:
| Q |
368 |
agagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttaggaat |
423 |
Q |
| |
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|||||| |||||||| || |||||||||| ||||||||||||||||||| |||||| |
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| T |
5995023 |
agagaaagaagatgaaagatgagggtattgattgccatatcaaaaagctaaggaat |
5994968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 5996180 - 5996103
Alignment:
| Q |
21 |
atgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtaggaaccaaaaacacagtctgctcggctacaaa |
98 |
Q |
| |
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||||||| | |||||||||||||||| |||||||||||| ||| ||| ||| ||||| ||| ||||||| || ||||| |
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| T |
5996180 |
atgtaaattgtgagtcaattcccaactgaagaagatagcgaaactagcaacaaaaaatacaatctgctcagcaacaaa |
5996103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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