View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11376_high_3 (Length: 432)
Name: NF11376_high_3
Description: NF11376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11376_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 2264747 - 2265144
Alignment:
| Q |
1 |
tgaccactaataactaagttagttacatgtttctcactcaatttatcaatagaatattattagtgcagagtcaaattgttgtatctttctttgtaatacc |
100 |
Q |
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| T |
2264747 |
tgaccactaataactaagttagttacatgtttctcactcaatttatcaatagaatattattagtgcagagtcaaattgttgtatctttctttgtaatacc |
2264846 |
T |
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| Q |
101 |
agataactaaaggaaaatcaaacagtcaaactaattaattaaattaacttaaactatgcaaaatacaaaatctgttttcatataaagctttgcttgagac |
200 |
Q |
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| T |
2264847 |
agataactaaaggaaaatcaaacagtcaaactaattaattaaattaacttaaactatgcaaaatacaaaatctcctttcatataaagc-ttgcttgagac |
2264945 |
T |
|
| Q |
201 |
atggaatggaagtgtcaaaccttcaacgagaagcaatacaaataattctttaaaatccaaaacaaagtttatatgctagaataattatgcctaggagaga |
300 |
Q |
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| T |
2264946 |
atggaatggaagtgtcaaaccttcaacgagaagcaatacaaataattc-------------------tttatatgctagaataattatgcctaggagaga |
2265026 |
T |
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| Q |
301 |
gatataattgaacaaacaaaataaagagtcttaatttaatttgctttatgttcacttctttcttttggcagaaaaagcatcagtgtgtctcataatccag |
400 |
Q |
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| T |
2265027 |
gatataattgaacaaacaaaataaagagtcttaatttaatttgctttatgttcacttctttcttttggcagaaaaagcatcagtgtgtctcataatccag |
2265126 |
T |
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