View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11376_high_4 (Length: 428)
Name: NF11376_high_4
Description: NF11376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11376_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 49533872 - 49534282
Alignment:
| Q |
18 |
ggaagggaaacggagagcagtcttgaagggtaccggaatggcgtcgtaacgacggcaatcaactatttgtgtatgaatacattatctcatataccctaca |
117 |
Q |
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| T |
49533872 |
ggaagggaaacggagagcagtcttgaagggtaccggaatggcgtcgtaacgacgacaatcaactatttgtgtatgaatacattatctcatataccctaca |
49533971 |
T |
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| Q |
118 |
atcttacaaatatctgtagtcttcaatactttggccttacaaatgtatcactcgcagtaatggcatgcctaatataggccattcatttttattaattgat |
217 |
Q |
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| T |
49533972 |
atcttacaaatatctgtagtcttcaatattttggccttacaaatgtatcactcgcagtaatgacatgcctaatataggccattcatttttattaattgat |
49534071 |
T |
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| Q |
218 |
gttcacctttggaccatgtcctcttagctatggacctctgctggaataattctcaagattgtctctttagtaattttcctctgaaaaagaaagtgcatta |
317 |
Q |
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| T |
49534072 |
gttcacctttggaccatgtcctcttagctatggacctctgctggaataattctcaagattatctctttagtaattttcctctgaaaaagaaagtgcatta |
49534171 |
T |
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| Q |
318 |
gagaattgttaattagaaaagaatatctatgaataatattatttcaatagatatgtccagccatttaaatcactcacccacaggattatatacatactaa |
417 |
Q |
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| T |
49534172 |
gagaattgttaattagaaaagaatatctatgaataatattatttcaatagatatgtccagccatttaaatcactcacccacaggattatatacatactaa |
49534271 |
T |
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| Q |
418 |
gatacttcatt |
428 |
Q |
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| T |
49534272 |
gatacttcatt |
49534282 |
T |
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