View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11376_high_6 (Length: 359)
Name: NF11376_high_6
Description: NF11376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11376_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 116 - 342
Target Start/End: Original strand, 9563060 - 9563287
Alignment:
| Q |
116 |
tatatatcaattatcctgttaatatatgataattacagtatgacactgagttggcccagcatgctacaaggatattccctatgtatatatttttataaat |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9563060 |
tatatatcaattatccagttaatatatgataatcacagtatgacactgagttggcccagcatgctacaaggatattccctatgtatatatttttataaat |
9563159 |
T |
|
| Q |
216 |
gaataaataaattggaatgttctagaatgagtaaaataatctttgttccataagt-nnnnnnnnctgatatttgagatattggagtgcatgtttaaatca |
314 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9563160 |
gaataaataaataggaatgttctagaaagagtcaaataatctttgttccataagtaaaaaaaaactgatatttgagatattggagtgcatgtttaaatca |
9563259 |
T |
|
| Q |
315 |
acaatttctcatatttgagcatttggtg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9563260 |
acaatttctcatatttgagcatttggtg |
9563287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 9571170 - 9571439
Alignment:
| Q |
1 |
ttctatacatgaatattaatttttagttatagtataacagtaaagaaatgcatatcttnnnnnnnnn-gttcatggtatttagtcnnnnnnntaaaagtt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
9571170 |
ttctatacatgaatattaatttttagttatagtataacagtaaagaaatgcatatcttaaaaaaaaaagttcatggtatttagtcaaaaaaataaaagtt |
9571269 |
T |
|
| Q |
100 |
cacctaacattcatggtatatatcaattatcctgttaatatatgataattacagt---atgacactgagttggcccagcatgctacaaggatattcccta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||| || |
|
|
| T |
9571270 |
cacctaacattcatggtatatatcaattatcctgttaatatatgataattacagtatgatgacactgagtgtgccctgcatgccacaaggatattctctg |
9571369 |
T |
|
| Q |
197 |
tgtatatatttttataaatgaataaataaattggaatgttctagaatgagtaaaataatctttgttccataagt |
270 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
9571370 |
tgtatatatttttata----tataaataaaatggaatgttctagaaagtgtaaaataatatttgttccataagt |
9571439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 9562959 - 9563011
Alignment:
| Q |
5 |
atacatgaatattaatttttagttatagtataacagtaaagaaatgcatatct |
57 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9562959 |
atacatgaatattattttttagttatagtataacagtaaagaaatgcatatct |
9563011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 9571483 - 9571521
Alignment:
| Q |
305 |
gtttaaatcaacaatttctcatatttgagcatttggtgt |
343 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
9571483 |
gtttaaataaaaaatttctcatatttgagcatttggtgt |
9571521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University