View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11376_low_1 (Length: 557)
Name: NF11376_low_1
Description: NF11376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11376_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 73 - 555
Target Start/End: Complemental strand, 19310705 - 19310224
Alignment:
| Q |
73 |
accactgcacgatcctcaacttctatatcttcattattcaattgtgttgcatcttcaaactctgagcaagttgagttgtcatctgagattactagttcat |
172 |
Q |
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| T |
19310705 |
accactgcacgatcctcaacttctatatcttcattattcaattgtgttgcatctataaactctgagcaagttgagctgtcatctgagattactagttcat |
19310606 |
T |
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| Q |
173 |
tgttaacttctttatcgggagtctcttcatcgtctaatagcagtgattcaaaattgttttgaacttcaagattctgtaaatgagttgtgtcactggatcc |
272 |
Q |
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| T |
19310605 |
tgttaacttctttatcgggagtctcttcatcgtctaatagcagtgattcaaaattgttttgaactttaagattctgtaaatgagttgtgtcactggatcc |
19310506 |
T |
|
| Q |
273 |
agcaatagcctgagctgctggaattacacctgttgtggggttttcgcctttgtataaatcagtttgcttgctctacaagttaactgagttattgtttgct |
372 |
Q |
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| T |
19310505 |
agcaatagcctgagctgctggaattacacctgttgtagggttttcgcctttgtataaatcagtttgcttgctctacaagttaactgaattattgtttgct |
19310406 |
T |
|
| Q |
373 |
ttctcagttccttcagtctgcaacacctccttattgtttctttctgaattctaccatccctaagtttcatgtaaacctgattaggagactttattcactt |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19310405 |
ttctcagttccttcagtctgcaacacctccttattgtttctttctgaattctaccatccctaagtttcatgtaaacctgattaggagac-ttattcactt |
19310307 |
T |
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| Q |
473 |
acttcttgactataggttccttatcagtttcatcatcaacctgcttattcactttcttatagttatccaaataatgacctatg |
555 |
Q |
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| T |
19310306 |
acttcttgactataggttccttatcagtttgatcatcaacctgcttattcactttcttatagttatccaaataatgtcctatg |
19310224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 19310865 - 19310810
Alignment:
| Q |
18 |
attaatgcaaatagtgttaattggaatctcatcatctctttctaattatgcaaaaa |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19310865 |
attaatgcaaatagtgttaattggaatctcatcatctctttctaattatgcaaaaa |
19310810 |
T |
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