View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11376_low_5 (Length: 362)
Name: NF11376_low_5
Description: NF11376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11376_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 52721639 - 52721298
Alignment:
| Q |
18 |
ccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacct |
117 |
Q |
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| T |
52721639 |
ccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacct |
52721540 |
T |
|
| Q |
118 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721539 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
52721440 |
T |
|
| Q |
218 |
tattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaagaaaaaccaatta |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52721439 |
tattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaatta |
52721340 |
T |
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| Q |
318 |
aagaaagcgtatttctgttggacttctttttcatctcactcg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52721339 |
aagaaagcgtatttctgttggacttctttttcatctccctcg |
52721298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 52712818 - 52712477
Alignment:
| Q |
18 |
ccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacct |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||| || |||||||||||||||||||||||||||||| |
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| T |
52712818 |
ccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacct |
52712719 |
T |
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| Q |
118 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
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| T |
52712718 |
gaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtggg |
52712619 |
T |
|
| Q |
218 |
tattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaagaaaaaccaatta |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
52712618 |
aattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaatta |
52712519 |
T |
|
| Q |
318 |
aagaaagcgtatttctgttggacttctttttcatctcactcg |
359 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||| |
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| T |
52712518 |
aagaaagcgtatttcttttggacttctttttcatctccctcg |
52712477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 52699001 - 52698658
Alignment:
| Q |
16 |
caccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataac |
115 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||| || |||||||||||| || |||||| |||||||||||| | || ||||||||||| |
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| T |
52699001 |
caccaataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataac |
52698902 |
T |
|
| Q |
116 |
ctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtg |
215 |
Q |
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||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | ||||||||||| |
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| T |
52698901 |
ctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtg |
52698802 |
T |
|
| Q |
216 |
ggtattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaagaaaaaccaat |
315 |
Q |
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|||| | ||| |||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | ||||| |||||| |||||| ||||||||| |
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| T |
52698801 |
ggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaat |
52698702 |
T |
|
| Q |
316 |
taaagaaagcgtatttctgttggacttctttttcatctcactcg |
359 |
Q |
| |
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||||||||| | ||||| |||||||||||||||||||| |||| |
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| T |
52698701 |
taaagaaagagaatttcatttggacttctttttcatctccctcg |
52698658 |
T |
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