View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11377_high_1 (Length: 516)
Name: NF11377_high_1
Description: NF11377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11377_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 205 - 497
Target Start/End: Complemental strand, 9283721 - 9283425
Alignment:
| Q |
205 |
acaacgaggtacattaaaataa----gtagtggaactagctcataatgtggctacctctacaaaagcaagagcgaccttgtttgcttgtctcctattaaa |
300 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
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| T |
9283721 |
acaatgaggtacattaaaataattaagtagtggaactagctcataatgtggctacctctgcaaaagcatgagccaccttgtttgcttgtctcctattaaa |
9283622 |
T |
|
| Q |
301 |
tgcaaccttatagtttgtaaattgggtggcgaaaaaattcctgcaagttgttatgacgcgaccaaactccgcggcatcaacccggttcatatggaatgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9283621 |
tgcaaccttatagtttgtaaattgggtggcgaaaaaattccttcaagttgttatgacgcgaccaaactccgtagcatcaacccggttcatatggaatgca |
9283522 |
T |
|
| Q |
401 |
tatgtagttgtttttgaatcaagcacgaagtcgacgttatcaaattgcatatcactgatccactgaaacacattgaataaacctagcgctttatcca |
497 |
Q |
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||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9283521 |
tatatagttgtttttgaatcaagcacgaagttggcattatcaaattgcatatcactgatccactgaaacacatgaaataaacctagcgctttatcca |
9283425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 2346513 - 2346350
Alignment:
| Q |
33 |
agaatttggtgatacaacctttgaatgaagtgtgacaaaatgtgagaaattgagctgaactggtgcaatggtaattatccaggggatgcaaattaaaaat |
132 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2346513 |
agaatttggtgatacaacctttggatgaagtgtgacaaaatgtgagaaattgagctgaactggtgcaatggtaattatccaggggatgcaaattagaaat |
2346414 |
T |
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| Q |
133 |
aatta-aaattttggtataattatcaagaagtaagggtgtgcagctgcactctctcaagtacat |
195 |
Q |
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| T |
2346413 |
aagtaggaaatttggtataattatcaagaagtcagggtgtgcagctgcaccctctcaagtacat |
2346350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 460
Target Start/End: Original strand, 40861197 - 40861281
Alignment:
| Q |
375 |
catcaacccggttcatatggaatgcatatgtagttgtttttgaatcaagcacgaagtcgacgttatcaaattgcatatcactgatc |
460 |
Q |
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||||||| ||| || ||||||| ||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
40861197 |
catcaactcgggtcgtatggaaagcatatgtagttgtttt-gaatcaagcccgaagtcaacattatcaaattgcatatcactgatc |
40861281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 32816207 - 32816370
Alignment:
| Q |
33 |
agaatttggtgatacaacctttgaatgaagtgtgacaaaatgtgagaaattgagctgaactggtgcaatggtaattatccaggggatgcaaattaaaaat |
132 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32816207 |
agaatttggtgatacaacctttggatgaagtgtgacaaaatgtgaaaaattgagctgaactggtgcaatggtaattatccaggggatgcaaattagaaat |
32816306 |
T |
|
| Q |
133 |
aatta-aaattttggtataattatcaagaagtaagggtgtgcagctgcactctctcaagtacat |
195 |
Q |
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|| || || ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
32816307 |
aaataggaaatttggtataattatcaaaaagtcagggtgtgcagctgcaccctctcaagtacat |
32816370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 41662146 - 41661983
Alignment:
| Q |
33 |
agaatttggtgatacaacctttgaatgaagtgtgacaaaatgtgagaaattgagctgaactggtgcaatggtaattatccaggggatgcaaattaaaaat |
132 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
41662146 |
agaatttggtgatacaacctttggatgaagtgtgacaaaatgtgaaaaattgagctgaactagtgcaatggtaattatccaggggatgcaaattagaaat |
41662047 |
T |
|
| Q |
133 |
aatta-aaattttggtataattatcaagaagtaagggtgtgcagctgcactctctcaagtacat |
195 |
Q |
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|| || || |||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
41662046 |
aagtaggaaatttggtataattatcaagaagtcagggtgcgcagctgcaccctctcaagtacat |
41661983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 8274793 - 8274746
Alignment:
| Q |
205 |
acaacgaggtacattaaaataagtagtggaactagctcataatgtggc |
252 |
Q |
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|||||||||||||| | |||||||||||||||||||| |||||||||| |
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| T |
8274793 |
acaacgaggtacataagaataagtagtggaactagctaataatgtggc |
8274746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 9779836 - 9779673
Alignment:
| Q |
33 |
agaatttggtgatacaacctttgaatgaagtgtgacaaaatgtgagaaattgagctgaactggtgcaatggtaattatccaggggatgcaaattaaaaat |
132 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
9779836 |
agaatttggttatacaacctttgaatgaagtgtgacaaaatgtgagaaattgagctgaactggtgcaatggtaattatccaggctatgcaaattagaaat |
9779737 |
T |
|
| Q |
133 |
aa-ttaaaattttggtataattatcaagaagtaagggtgtgcagctgcactctctcaagtacat |
195 |
Q |
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|| | |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
9779736 |
aagtaaaaaatttggtataatgttcaagaagtcagggtgtgcagctgcaccctctcaagtacat |
9779673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 13672285 - 13672194
Alignment:
| Q |
263 |
aaagcaagagcgaccttgtttgcttgtctcctattaaatgcaaccttatagtttgtaaattgggtggcgaaaaaattcctgcaagttgttat |
354 |
Q |
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|||||| ||||||||| ||||||||||||||||||||| |||||| | ||||| ||| ||| | ||||||| |||| |||||| |||||| |
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| T |
13672285 |
aaagcatgagcgacctcgtttgcttgtctcctattaaactcaacctcagagtttctaacttgagaggcgaaagtattcttgcaagctgttat |
13672194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 12698931 - 12698976
Alignment:
| Q |
207 |
aacgaggtacattaaaataagtagtggaactagctcataatgtggc |
252 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
12698931 |
aacgaggtacattataataagtagtggaactagctaatgatgtggc |
12698976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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