View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11377_high_2 (Length: 465)
Name: NF11377_high_2
Description: NF11377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11377_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 45160694 - 45160270
Alignment:
| Q |
19 |
cacagaaaagtaaagaatgaaatagcnnnnnnnntagtagttcatttaccaaaatactctttnnnnnnntaagaatagagaaactaacagtttgtgatat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45160694 |
cacagaaaagtaaagaatgaaatag-taaaaaaatagtagttcatttaccaaaatactctttaaaaaaataagaatagagaaactaacagtttgtgatat |
45160596 |
T |
|
| Q |
119 |
ttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatcaagta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45160595 |
ttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttcttttgtgttatcctgtgaatatcaagta |
45160496 |
T |
|
| Q |
219 |
tcaacaaaaggaaattattacaaatggtaaatatgtaataaatagtagaannnnnnnaattcattaacgatgtatataaattcatcctcacaagttatat |
318 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
45160495 |
tcaacaaaaggaaattattataaatggtaaatatgtaataaatagcagaatttttttaattcattaacgatgtatataagttcatcctaacaagttatat |
45160396 |
T |
|
| Q |
319 |
ttgtaactctcaaatactagatatgaaattttttgtaagactgaatttgaaacttaaatagatataattgaaaacataccaagagcattataaaactgca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
45160395 |
ttgtaactctcaaatactagatatgaaattttttgaaagactgaatttgaaacttaaatagatataattgaaaa-----caagagcatgataaaactgca |
45160301 |
T |
|
| Q |
419 |
agtcaaccaattatttggctcataactagct |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45160300 |
agtcaaccaattatttggctcataactagct |
45160270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 24127611 - 24127792
Alignment:
| Q |
59 |
ttcatttaccaaaatactctttnnnnnnntaagaatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaatt |
158 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
24127611 |
ttcatttaccaaaatactctttaaaaaa-taaaaatagagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcagagtggaatt |
24127709 |
T |
|
| Q |
159 |
acctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattacaa |
241 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24127710 |
atctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatcaagtatcaacaaaaggaaattattacaa |
24127792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 276 - 391
Target Start/End: Original strand, 24127954 - 24128070
Alignment:
| Q |
276 |
aattcattaacgatgtatataaattcatcctcacaagttatatttgtaactctcaaatact--agatatgaaattttttgtaagactgaatttgaaactt |
373 |
Q |
| |
|
|||| ||||| || |||||| |||||||||| ||||||||||||||||||||||| ||||| | |||||||| |||| ||||| |||||||||||||| |
|
|
| T |
24127954 |
aattaattaatgacgtatatgaattcatcctaacaagttatatttgtaactctcagatactaaatatatgaaa-cttttataagaatgaatttgaaactt |
24128052 |
T |
|
| Q |
374 |
aaatagatataattgaaa |
391 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24128053 |
aaatagatataattgaaa |
24128070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 380 - 449
Target Start/End: Original strand, 24128096 - 24128165
Alignment:
| Q |
380 |
atataattgaaaacataccaagagcattataaaactgcaagtcaaccaattatttggctcataactagct |
449 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24128096 |
atataattgaaagcacaccaagagcatgataaaactgcaagtcaaccaattatttggctcataactagct |
24128165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 8716656 - 8716779
Alignment:
| Q |
115 |
atatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatca |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||| | ||||||||| | |
|
|
| T |
8716656 |
atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggtaatctaagacttctttggtgttgacgtgtgaatataa |
8716755 |
T |
|
| Q |
215 |
agtatcaacaaaaggaaattatta |
238 |
Q |
| |
|
|||| ||||||||| ||||||||| |
|
|
| T |
8716756 |
agtaacaacaaaagaaaattatta |
8716779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 8722967 - 8723114
Alignment:
| Q |
92 |
aatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttct |
191 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||| ||||||||||||| ||||||||| |
|
|
| T |
8722967 |
aatagagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggtaacctaaaacttct |
8723066 |
T |
|
| Q |
192 |
ttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattac |
239 |
Q |
| |
|
|||||| | | || |||| | ||||| |||||||||||||||||||| |
|
|
| T |
8723067 |
ttggtgctgacttgcgaatctaaagtaacaacaaaaggaaattattac |
8723114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 9068543 - 9068666
Alignment:
| Q |
115 |
atatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatca |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||| | ||||||||| | |
|
|
| T |
9068543 |
atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggtaatctaagacttctttggtgttgacgtgtgaatataa |
9068642 |
T |
|
| Q |
215 |
agtatcaacaaaaggaaattatta |
238 |
Q |
| |
|
|||| ||||||||| ||||||||| |
|
|
| T |
9068643 |
agtaacaacaaaagaaaattatta |
9068666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 9074854 - 9075001
Alignment:
| Q |
92 |
aatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttct |
191 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||| ||||||||||||| ||||||||| |
|
|
| T |
9074854 |
aatagagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggtaacctaaaacttct |
9074953 |
T |
|
| Q |
192 |
ttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattac |
239 |
Q |
| |
|
|||||| | | || |||| | ||||| |||||||||||||||||||| |
|
|
| T |
9074954 |
ttggtgctgacttgcgaatctaaagtaacaacaaaaggaaattattac |
9075001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 16335714 - 16335818
Alignment:
| Q |
92 |
aatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttct |
191 |
Q |
| |
|
|||||| || |||||| ||| | ||| ||| |||||||| ||| | ||||||| ||| |||||||||| ||| ||| ||| |||| |||| | ||||||| |
|
|
| T |
16335714 |
aatagaaaagctaacaatttttaataattcttttccgatttccttcttgctcatgcataatggaattatctcacttgaaagaaggaaacctataacttct |
16335813 |
T |
|
| Q |
192 |
ttggt |
196 |
Q |
| |
|
||||| |
|
|
| T |
16335814 |
ttggt |
16335818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University