View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11377_high_3 (Length: 296)
Name: NF11377_high_3
Description: NF11377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11377_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 12559133 - 12559405
Alignment:
| Q |
12 |
tcatcaattacattgcaaatcatggtgaaggtcgatggaatactcttgctcgttcagctggtaattcacaactcnnnnnnnnncttctactttttatgga |
111 |
Q |
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| T |
12559133 |
tcatcaattacattgcaaatcatggtgaaggtcgatggaatactcttgctcgttccgctggtaattcacaact----ttttttcttctgctttttatgga |
12559228 |
T |
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| Q |
112 |
agaataataagaactata--tattatattatggaccactatagctgtttcatgattgcaattgttgatgggaaatcatatacttccactattttcttcaa |
209 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12559229 |
agaataataagaactatatatattatattatggaccactatagctgtttcatgattgcaattgttgatgggaaatcatatacttccactattttcttcaa |
12559328 |
T |
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| Q |
210 |
cgctatgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgtcttgtttcatc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12559329 |
cgctatgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgtcttgtttcatc |
12559405 |
T |
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